Table 2.
Open in new tab

The OTUs recovered in the amplicon sequencing of the nirS gene in the trough and polygon interior soils.

OTU numberClosest NCBI BLAST matchClosest NCBI match ID% matchLocation of the uncultured strainReference of the matchClosest cultured NCBI match% matchNameReference of the cultured match
1Uncultured bacterium clone F-5-1-33KC46873790Qinghai, Tibet PlateauXie et al. (2014)AB54230980Herbaspirillum sp. TSA20wIshii et al. (2011)
2Uncultured bacteriumHE99556783Fen denitrifier community in Finnish LaplandPalmer and Horn (2015)AB54571383Herbaspirillum sp. TSO46–2Unpublished, direct NCBI submission
3Uncultured bacterium 518S64AB37785593Rice paddy field soil, TokyoYoshida et al. (2009)AM23090374Paracoccus sp. R-24 665Heylen et al. (2006)
4Uncultured bacterium clone 727S039AB37795192Rice paddy field soil, TokyoYoshida et al. (2009)AJ62684077Pseudomonas sp. R125Unpublished, direct NCBI submission
5Uncultured bacterium clone F-5-1-23KC46872798Qinghai, Tibet PlateauXie et al. (2014)AB48049088Rhodanobacter sp. D206aUnpublished, direct NCBI submission
6Uncultured bacterium clone F-7-3-177KC46902695Qinghai, Tibet PlateauXie et al. (2014)AB69689078Rhodocyclales bacterium UNPF16Unpublished, direct NCBI submission
7Uncultured bacterium clone F-7-3-217KC46905392Qinghai, Tibet PlateauXie et al. (2014)AP01487977Sulfuricaulis limicolaUmezawa et al. (2016)
8Pseudomonas sp. TKPCP006852100Isolated from sediments at Kyushu, JapanOhtsubo et al. (2014)CP006852100Pseudomonas sp. TKPOhtsubo et al. (2014)
9Uncultured prokaryote clone nirS1–13KX37840388N/AUnpublished, direct NCBI submissionAB93770288Cupriavidus sp. NC3H-95aWei et al. (2015)
10Uncultured denitrifying bacterium clone J30927555_4_5_T7KJ49855699Wastewater treatment systemsUnpublished, direct NCBI submissionAP01254778Sulfuritalea hydrogenivorans sk43HWatanabe, Kojima and Fukui (2014)
OTU numberClosest NCBI BLAST matchClosest NCBI match ID% matchLocation of the uncultured strainReference of the matchClosest cultured NCBI match% matchNameReference of the cultured match
1Uncultured bacterium clone F-5-1-33KC46873790Qinghai, Tibet PlateauXie et al. (2014)AB54230980Herbaspirillum sp. TSA20wIshii et al. (2011)
2Uncultured bacteriumHE99556783Fen denitrifier community in Finnish LaplandPalmer and Horn (2015)AB54571383Herbaspirillum sp. TSO46–2Unpublished, direct NCBI submission
3Uncultured bacterium 518S64AB37785593Rice paddy field soil, TokyoYoshida et al. (2009)AM23090374Paracoccus sp. R-24 665Heylen et al. (2006)
4Uncultured bacterium clone 727S039AB37795192Rice paddy field soil, TokyoYoshida et al. (2009)AJ62684077Pseudomonas sp. R125Unpublished, direct NCBI submission
5Uncultured bacterium clone F-5-1-23KC46872798Qinghai, Tibet PlateauXie et al. (2014)AB48049088Rhodanobacter sp. D206aUnpublished, direct NCBI submission
6Uncultured bacterium clone F-7-3-177KC46902695Qinghai, Tibet PlateauXie et al. (2014)AB69689078Rhodocyclales bacterium UNPF16Unpublished, direct NCBI submission
7Uncultured bacterium clone F-7-3-217KC46905392Qinghai, Tibet PlateauXie et al. (2014)AP01487977Sulfuricaulis limicolaUmezawa et al. (2016)
8Pseudomonas sp. TKPCP006852100Isolated from sediments at Kyushu, JapanOhtsubo et al. (2014)CP006852100Pseudomonas sp. TKPOhtsubo et al. (2014)
9Uncultured prokaryote clone nirS1–13KX37840388N/AUnpublished, direct NCBI submissionAB93770288Cupriavidus sp. NC3H-95aWei et al. (2015)
10Uncultured denitrifying bacterium clone J30927555_4_5_T7KJ49855699Wastewater treatment systemsUnpublished, direct NCBI submissionAP01254778Sulfuritalea hydrogenivorans sk43HWatanabe, Kojima and Fukui (2014)
Table 2.
Open in new tab

The OTUs recovered in the amplicon sequencing of the nirS gene in the trough and polygon interior soils.

OTU numberClosest NCBI BLAST matchClosest NCBI match ID% matchLocation of the uncultured strainReference of the matchClosest cultured NCBI match% matchNameReference of the cultured match
1Uncultured bacterium clone F-5-1-33KC46873790Qinghai, Tibet PlateauXie et al. (2014)AB54230980Herbaspirillum sp. TSA20wIshii et al. (2011)
2Uncultured bacteriumHE99556783Fen denitrifier community in Finnish LaplandPalmer and Horn (2015)AB54571383Herbaspirillum sp. TSO46–2Unpublished, direct NCBI submission
3Uncultured bacterium 518S64AB37785593Rice paddy field soil, TokyoYoshida et al. (2009)AM23090374Paracoccus sp. R-24 665Heylen et al. (2006)
4Uncultured bacterium clone 727S039AB37795192Rice paddy field soil, TokyoYoshida et al. (2009)AJ62684077Pseudomonas sp. R125Unpublished, direct NCBI submission
5Uncultured bacterium clone F-5-1-23KC46872798Qinghai, Tibet PlateauXie et al. (2014)AB48049088Rhodanobacter sp. D206aUnpublished, direct NCBI submission
6Uncultured bacterium clone F-7-3-177KC46902695Qinghai, Tibet PlateauXie et al. (2014)AB69689078Rhodocyclales bacterium UNPF16Unpublished, direct NCBI submission
7Uncultured bacterium clone F-7-3-217KC46905392Qinghai, Tibet PlateauXie et al. (2014)AP01487977Sulfuricaulis limicolaUmezawa et al. (2016)
8Pseudomonas sp. TKPCP006852100Isolated from sediments at Kyushu, JapanOhtsubo et al. (2014)CP006852100Pseudomonas sp. TKPOhtsubo et al. (2014)
9Uncultured prokaryote clone nirS1–13KX37840388N/AUnpublished, direct NCBI submissionAB93770288Cupriavidus sp. NC3H-95aWei et al. (2015)
10Uncultured denitrifying bacterium clone J30927555_4_5_T7KJ49855699Wastewater treatment systemsUnpublished, direct NCBI submissionAP01254778Sulfuritalea hydrogenivorans sk43HWatanabe, Kojima and Fukui (2014)
OTU numberClosest NCBI BLAST matchClosest NCBI match ID% matchLocation of the uncultured strainReference of the matchClosest cultured NCBI match% matchNameReference of the cultured match
1Uncultured bacterium clone F-5-1-33KC46873790Qinghai, Tibet PlateauXie et al. (2014)AB54230980Herbaspirillum sp. TSA20wIshii et al. (2011)
2Uncultured bacteriumHE99556783Fen denitrifier community in Finnish LaplandPalmer and Horn (2015)AB54571383Herbaspirillum sp. TSO46–2Unpublished, direct NCBI submission
3Uncultured bacterium 518S64AB37785593Rice paddy field soil, TokyoYoshida et al. (2009)AM23090374Paracoccus sp. R-24 665Heylen et al. (2006)
4Uncultured bacterium clone 727S039AB37795192Rice paddy field soil, TokyoYoshida et al. (2009)AJ62684077Pseudomonas sp. R125Unpublished, direct NCBI submission
5Uncultured bacterium clone F-5-1-23KC46872798Qinghai, Tibet PlateauXie et al. (2014)AB48049088Rhodanobacter sp. D206aUnpublished, direct NCBI submission
6Uncultured bacterium clone F-7-3-177KC46902695Qinghai, Tibet PlateauXie et al. (2014)AB69689078Rhodocyclales bacterium UNPF16Unpublished, direct NCBI submission
7Uncultured bacterium clone F-7-3-217KC46905392Qinghai, Tibet PlateauXie et al. (2014)AP01487977Sulfuricaulis limicolaUmezawa et al. (2016)
8Pseudomonas sp. TKPCP006852100Isolated from sediments at Kyushu, JapanOhtsubo et al. (2014)CP006852100Pseudomonas sp. TKPOhtsubo et al. (2014)
9Uncultured prokaryote clone nirS1–13KX37840388N/AUnpublished, direct NCBI submissionAB93770288Cupriavidus sp. NC3H-95aWei et al. (2015)
10Uncultured denitrifying bacterium clone J30927555_4_5_T7KJ49855699Wastewater treatment systemsUnpublished, direct NCBI submissionAP01254778Sulfuritalea hydrogenivorans sk43HWatanabe, Kojima and Fukui (2014)
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