Table 3.

FPKMs and functional categories of genes significantly down-regulated in V1 at S1

Gene nameV1S1V2S1Description
Transcription factors
Glyma.06G1315002.715.96Dof-type zinc finger DNA-binding family protein
Glyma.20G0117005.3912.82Duplicated homeodomain-like superfamily protein
Glyma.05G03220032.179.74Myb-like transcription factor family protein
Glyma.06G2333005.3813.71PHD finger family protein
Glyma.07G12680033.4694.78Zinc finger C-x8-C-x5-C-x3-H type family protein
Glyma.09G2740006.3613.08WRKY DNA-binding domain
Glyma.15G0910001.885.73Auxin response factor 6
Glyma.12G0222004.289.08DHHC-type zinc finger family protein
Glyma.14G0627004.188.86GATA-type zinc finger transcription factor family protein
Glyma.17G0809002.867.83K-box region and MADS-box transcription factor family protein
Glyma.07G2342003.19.5Squamosa promoter binding protein-like 1
Glyma.06G2381000.3354.1Squamosa promoter binding protein-like 8
Glyma.17G09670021.9746.05Transcription factor HEX, contains HOX and HALZ domains
Plant hormone signal transduction
Glyma.19G1611006.2617.16Indole-3-acetic acid inducible 14/AUX/IAA family
Glyma.07G0152004.078.62Indole-3-acetic acid inducible 18/AUX/IAA family
Glyma.02G24560064.07155.15Gibberellin-regulated family protein
Glyma.04G16960054.48115.29Gibberellin-regulated family protein
Glyma.10G03190044.4395Auxin-responsive protein IAA
Glyma.12G0351001.16.6SAUR family protein
MAPK signaling pathway
Glyma.02G0932002.1954.01Heat shock 70 kDa protein 1/8
Flavone and flavonol biosynthesis
Glyma.06G295700372.571014.74Flavonol 3-O-methyltransferase
Glyma.12G109800150.69308.27Flavonol 3-O-methyltransferase
Glyma.06G2957008.3121.45Flavonol 3-O-methyltransferase
Fatty acid metabolism
Glyma.02G2733002.035.16Enoyl reductase [EC:1.3.1.-]
Glyma.07G12150017.7242.39Fatty acid hydroxylase superfamily
Glyma.10G04250019.2156.07GDSL-like lipase/acylhydrolase superfamily protein
Glyma.06G1839004.6310.3Aldehyde dehydrogenase (NAD+)
Seed storage
Glyma.18G1900003.1824.62Seed storage 2S albumin superfamily protein
Cytochrome P450
Glyma.19G0152000.757.5Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
Glyma.09G1863003.8816.44Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
Gene nameV1S1V2S1Description
Transcription factors
Glyma.06G1315002.715.96Dof-type zinc finger DNA-binding family protein
Glyma.20G0117005.3912.82Duplicated homeodomain-like superfamily protein
Glyma.05G03220032.179.74Myb-like transcription factor family protein
Glyma.06G2333005.3813.71PHD finger family protein
Glyma.07G12680033.4694.78Zinc finger C-x8-C-x5-C-x3-H type family protein
Glyma.09G2740006.3613.08WRKY DNA-binding domain
Glyma.15G0910001.885.73Auxin response factor 6
Glyma.12G0222004.289.08DHHC-type zinc finger family protein
Glyma.14G0627004.188.86GATA-type zinc finger transcription factor family protein
Glyma.17G0809002.867.83K-box region and MADS-box transcription factor family protein
Glyma.07G2342003.19.5Squamosa promoter binding protein-like 1
Glyma.06G2381000.3354.1Squamosa promoter binding protein-like 8
Glyma.17G09670021.9746.05Transcription factor HEX, contains HOX and HALZ domains
Plant hormone signal transduction
Glyma.19G1611006.2617.16Indole-3-acetic acid inducible 14/AUX/IAA family
Glyma.07G0152004.078.62Indole-3-acetic acid inducible 18/AUX/IAA family
Glyma.02G24560064.07155.15Gibberellin-regulated family protein
Glyma.04G16960054.48115.29Gibberellin-regulated family protein
Glyma.10G03190044.4395Auxin-responsive protein IAA
Glyma.12G0351001.16.6SAUR family protein
MAPK signaling pathway
Glyma.02G0932002.1954.01Heat shock 70 kDa protein 1/8
Flavone and flavonol biosynthesis
Glyma.06G295700372.571014.74Flavonol 3-O-methyltransferase
Glyma.12G109800150.69308.27Flavonol 3-O-methyltransferase
Glyma.06G2957008.3121.45Flavonol 3-O-methyltransferase
Fatty acid metabolism
Glyma.02G2733002.035.16Enoyl reductase [EC:1.3.1.-]
Glyma.07G12150017.7242.39Fatty acid hydroxylase superfamily
Glyma.10G04250019.2156.07GDSL-like lipase/acylhydrolase superfamily protein
Glyma.06G1839004.6310.3Aldehyde dehydrogenase (NAD+)
Seed storage
Glyma.18G1900003.1824.62Seed storage 2S albumin superfamily protein
Cytochrome P450
Glyma.19G0152000.757.5Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
Glyma.09G1863003.8816.44Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
Table 3.

FPKMs and functional categories of genes significantly down-regulated in V1 at S1

Gene nameV1S1V2S1Description
Transcription factors
Glyma.06G1315002.715.96Dof-type zinc finger DNA-binding family protein
Glyma.20G0117005.3912.82Duplicated homeodomain-like superfamily protein
Glyma.05G03220032.179.74Myb-like transcription factor family protein
Glyma.06G2333005.3813.71PHD finger family protein
Glyma.07G12680033.4694.78Zinc finger C-x8-C-x5-C-x3-H type family protein
Glyma.09G2740006.3613.08WRKY DNA-binding domain
Glyma.15G0910001.885.73Auxin response factor 6
Glyma.12G0222004.289.08DHHC-type zinc finger family protein
Glyma.14G0627004.188.86GATA-type zinc finger transcription factor family protein
Glyma.17G0809002.867.83K-box region and MADS-box transcription factor family protein
Glyma.07G2342003.19.5Squamosa promoter binding protein-like 1
Glyma.06G2381000.3354.1Squamosa promoter binding protein-like 8
Glyma.17G09670021.9746.05Transcription factor HEX, contains HOX and HALZ domains
Plant hormone signal transduction
Glyma.19G1611006.2617.16Indole-3-acetic acid inducible 14/AUX/IAA family
Glyma.07G0152004.078.62Indole-3-acetic acid inducible 18/AUX/IAA family
Glyma.02G24560064.07155.15Gibberellin-regulated family protein
Glyma.04G16960054.48115.29Gibberellin-regulated family protein
Glyma.10G03190044.4395Auxin-responsive protein IAA
Glyma.12G0351001.16.6SAUR family protein
MAPK signaling pathway
Glyma.02G0932002.1954.01Heat shock 70 kDa protein 1/8
Flavone and flavonol biosynthesis
Glyma.06G295700372.571014.74Flavonol 3-O-methyltransferase
Glyma.12G109800150.69308.27Flavonol 3-O-methyltransferase
Glyma.06G2957008.3121.45Flavonol 3-O-methyltransferase
Fatty acid metabolism
Glyma.02G2733002.035.16Enoyl reductase [EC:1.3.1.-]
Glyma.07G12150017.7242.39Fatty acid hydroxylase superfamily
Glyma.10G04250019.2156.07GDSL-like lipase/acylhydrolase superfamily protein
Glyma.06G1839004.6310.3Aldehyde dehydrogenase (NAD+)
Seed storage
Glyma.18G1900003.1824.62Seed storage 2S albumin superfamily protein
Cytochrome P450
Glyma.19G0152000.757.5Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
Glyma.09G1863003.8816.44Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
Gene nameV1S1V2S1Description
Transcription factors
Glyma.06G1315002.715.96Dof-type zinc finger DNA-binding family protein
Glyma.20G0117005.3912.82Duplicated homeodomain-like superfamily protein
Glyma.05G03220032.179.74Myb-like transcription factor family protein
Glyma.06G2333005.3813.71PHD finger family protein
Glyma.07G12680033.4694.78Zinc finger C-x8-C-x5-C-x3-H type family protein
Glyma.09G2740006.3613.08WRKY DNA-binding domain
Glyma.15G0910001.885.73Auxin response factor 6
Glyma.12G0222004.289.08DHHC-type zinc finger family protein
Glyma.14G0627004.188.86GATA-type zinc finger transcription factor family protein
Glyma.17G0809002.867.83K-box region and MADS-box transcription factor family protein
Glyma.07G2342003.19.5Squamosa promoter binding protein-like 1
Glyma.06G2381000.3354.1Squamosa promoter binding protein-like 8
Glyma.17G09670021.9746.05Transcription factor HEX, contains HOX and HALZ domains
Plant hormone signal transduction
Glyma.19G1611006.2617.16Indole-3-acetic acid inducible 14/AUX/IAA family
Glyma.07G0152004.078.62Indole-3-acetic acid inducible 18/AUX/IAA family
Glyma.02G24560064.07155.15Gibberellin-regulated family protein
Glyma.04G16960054.48115.29Gibberellin-regulated family protein
Glyma.10G03190044.4395Auxin-responsive protein IAA
Glyma.12G0351001.16.6SAUR family protein
MAPK signaling pathway
Glyma.02G0932002.1954.01Heat shock 70 kDa protein 1/8
Flavone and flavonol biosynthesis
Glyma.06G295700372.571014.74Flavonol 3-O-methyltransferase
Glyma.12G109800150.69308.27Flavonol 3-O-methyltransferase
Glyma.06G2957008.3121.45Flavonol 3-O-methyltransferase
Fatty acid metabolism
Glyma.02G2733002.035.16Enoyl reductase [EC:1.3.1.-]
Glyma.07G12150017.7242.39Fatty acid hydroxylase superfamily
Glyma.10G04250019.2156.07GDSL-like lipase/acylhydrolase superfamily protein
Glyma.06G1839004.6310.3Aldehyde dehydrogenase (NAD+)
Seed storage
Glyma.18G1900003.1824.62Seed storage 2S albumin superfamily protein
Cytochrome P450
Glyma.19G0152000.757.5Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
Glyma.09G1863003.8816.44Cytochrome P450 CYP2 subfamily
Glyma.01G1223000.195.14Cytochrome P450
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