Table 1.
Open in new tab

Summary statistics of whole-genome sequence and transcriptome data, assemblies and annotation.

Cryptosporidium hominisCryptosporidiumCryptosporidium
meleagridisbaileyi
Isolate: DNATU502aTU502_2012UKH1UKMEL1TAMU-09Q1
gDNA Illumina library fragment size (bp)N/A460461517654
No. MiSeq readsN/A6,871,8587,596,41022,862,0446,240,960
No. base pairsN/A1,724,836,3581,906,698,9106,881,475,2441,566,480,960
Assembly size (bp)8,743,5709,107,7399,156,0918,973,2008,493,640
No. of contigs142211915657145
Contig N5014,504238,509179,408322,908203,018
Largest contig (bp)90,4441,270,815542,781732,862702,637
G + C content (%)30.930.130.131.024.3
No. protein-coding genes3,8853,7453,7653,7583,692
Average gene length (bp)1,3601,8921,8301,8441,778
Percent coding60.4%77.8%75.2%77.2%77.3%
Accession no.AAEL00000000JIBM00000000JIBN00000000JIBK00000000JIBL00000000
SNPs relative to TU502a synonymous : non-syn1303 : 2,567718 : 1336N/AN/A
SNPs relative to TU502_2012 synonymous : non-synN/A143 : 339N/AN/A
Isolate: RNATU502_2012UKH1UKMEL1TAMU-10GZ1
No. HiSeq read pairs16,568,11592,878,236N/A55,829,305
No. expressed genesb1,8682,454N/A2,235
Accession no.SRX481527SRX481475N/ASRX481530
Cryptosporidium hominisCryptosporidiumCryptosporidium
meleagridisbaileyi
Isolate: DNATU502aTU502_2012UKH1UKMEL1TAMU-09Q1
gDNA Illumina library fragment size (bp)N/A460461517654
No. MiSeq readsN/A6,871,8587,596,41022,862,0446,240,960
No. base pairsN/A1,724,836,3581,906,698,9106,881,475,2441,566,480,960
Assembly size (bp)8,743,5709,107,7399,156,0918,973,2008,493,640
No. of contigs142211915657145
Contig N5014,504238,509179,408322,908203,018
Largest contig (bp)90,4441,270,815542,781732,862702,637
G + C content (%)30.930.130.131.024.3
No. protein-coding genes3,8853,7453,7653,7583,692
Average gene length (bp)1,3601,8921,8301,8441,778
Percent coding60.4%77.8%75.2%77.2%77.3%
Accession no.AAEL00000000JIBM00000000JIBN00000000JIBK00000000JIBL00000000
SNPs relative to TU502a synonymous : non-syn1303 : 2,567718 : 1336N/AN/A
SNPs relative to TU502_2012 synonymous : non-synN/A143 : 339N/AN/A
Isolate: RNATU502_2012UKH1UKMEL1TAMU-10GZ1
No. HiSeq read pairs16,568,11592,878,236N/A55,829,305
No. expressed genesb1,8682,454N/A2,235
Accession no.SRX481527SRX481475N/ASRX481530
a

2004 assembly (Xu et al.2004).

b

Minimum 5X CDS coverage.

Table 1.
Open in new tab

Summary statistics of whole-genome sequence and transcriptome data, assemblies and annotation.

Cryptosporidium hominisCryptosporidiumCryptosporidium
meleagridisbaileyi
Isolate: DNATU502aTU502_2012UKH1UKMEL1TAMU-09Q1
gDNA Illumina library fragment size (bp)N/A460461517654
No. MiSeq readsN/A6,871,8587,596,41022,862,0446,240,960
No. base pairsN/A1,724,836,3581,906,698,9106,881,475,2441,566,480,960
Assembly size (bp)8,743,5709,107,7399,156,0918,973,2008,493,640
No. of contigs142211915657145
Contig N5014,504238,509179,408322,908203,018
Largest contig (bp)90,4441,270,815542,781732,862702,637
G + C content (%)30.930.130.131.024.3
No. protein-coding genes3,8853,7453,7653,7583,692
Average gene length (bp)1,3601,8921,8301,8441,778
Percent coding60.4%77.8%75.2%77.2%77.3%
Accession no.AAEL00000000JIBM00000000JIBN00000000JIBK00000000JIBL00000000
SNPs relative to TU502a synonymous : non-syn1303 : 2,567718 : 1336N/AN/A
SNPs relative to TU502_2012 synonymous : non-synN/A143 : 339N/AN/A
Isolate: RNATU502_2012UKH1UKMEL1TAMU-10GZ1
No. HiSeq read pairs16,568,11592,878,236N/A55,829,305
No. expressed genesb1,8682,454N/A2,235
Accession no.SRX481527SRX481475N/ASRX481530
Cryptosporidium hominisCryptosporidiumCryptosporidium
meleagridisbaileyi
Isolate: DNATU502aTU502_2012UKH1UKMEL1TAMU-09Q1
gDNA Illumina library fragment size (bp)N/A460461517654
No. MiSeq readsN/A6,871,8587,596,41022,862,0446,240,960
No. base pairsN/A1,724,836,3581,906,698,9106,881,475,2441,566,480,960
Assembly size (bp)8,743,5709,107,7399,156,0918,973,2008,493,640
No. of contigs142211915657145
Contig N5014,504238,509179,408322,908203,018
Largest contig (bp)90,4441,270,815542,781732,862702,637
G + C content (%)30.930.130.131.024.3
No. protein-coding genes3,8853,7453,7653,7583,692
Average gene length (bp)1,3601,8921,8301,8441,778
Percent coding60.4%77.8%75.2%77.2%77.3%
Accession no.AAEL00000000JIBM00000000JIBN00000000JIBK00000000JIBL00000000
SNPs relative to TU502a synonymous : non-syn1303 : 2,567718 : 1336N/AN/A
SNPs relative to TU502_2012 synonymous : non-synN/A143 : 339N/AN/A
Isolate: RNATU502_2012UKH1UKMEL1TAMU-10GZ1
No. HiSeq read pairs16,568,11592,878,236N/A55,829,305
No. expressed genesb1,8682,454N/A2,235
Accession no.SRX481527SRX481475N/ASRX481530
a

2004 assembly (Xu et al.2004).

b

Minimum 5X CDS coverage.

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