... India. rRNA gene 16S–23S ITS secondary structures epilithic cyanobacteria phylogeny reshi river Department of Science and Technology 10.13039/501100006143 CRG/2018/004111 Banaras Hindu University 10.13039/501100002742 IoE 10.13039/100013633 Cyanobacteria successfully colonize...

... ), and the interaction between the clones was graphically explored using Cluster networks with an Equal Angle setting. To confirm if the polymorphisms encoded changes in the secondary structure of rRNA molecules, the RNA hairpin loops were predicted for both regions, ITS and LSU, using the default parameters...

... was recommended as the best methods of cooking channel fish for improved protein digestibility. channel fish cooking method in vitro digestion protein oxidation protein secondary structures Jiangsu Agricultural Industry Technology System 10.13039/501100020051 JATS [2021] 508 Channel fish...

..., additional sets were designed by minimizing or maximizing Δ G -dependent crosstalk between oligonucleotides while maintaining a T_m between 67 ° C and 73 ° C . Crosstalk is based on secondary structure and among others defined as the sum of all minimum free...

...Tsukasa Fukunaga; Michiaki Hamada Table 1 Summary of the software for analyzing transient/alternative secondary structures based on static approaches Software Description Algorithm Ref RNAfold Prediction of secondary structure with base pairing probability matrix...

... a Chinese processing plant. Then, three classes of chicken breast meats were used to prepare meat batters and meatballs. This study investigated the effects of three classes of chicken breast meat on the physicochemical properties, water distribution, protein secondary structures and microstructures...

... information disregarding other informative levels such as secondary or tertiary DNA conformations. In this work, we combined the most recent developments in DNA folding calculations with a phylogenetic comparative approach in order to investigate the formation of intrastrand secondary structures in the human...

... tracts and surrounding small blood vessels. Furthermore, like infiltrating astrocytomas and oligodendrogliomas, the infiltrating ependymoma cells formed other glial tumor secondary structures including perineuronal satellitosis and subpial tumor cell mounds ( 10 ). The diagnostic, surgical...

.... * The cox1 gene is split by a group IB intron that contains an ORF in frame with upstream exon1 and codes for a hypothetical protein. Twenty-three trn genes, coding for all amino acids, were identified in the H. uvarum mt genome and their predicted secondary structures were drawn, having...

..., dynamics and expression of the genetic information stored in bacterial genomes. DNA hairpins Bending Bioinformatic analysis Secondary structures Bacillus subtilis genome Experimental evidence is accumulating for various functional meanings of nucleic acids secondary structures in vivo...

..., including local amino acid sequence similarity by BLASTP, hidden Markov models (HMMs) of sequences of protein families using SAM, HMMs based on sequence motifs identified using meta-MEME. FORESST compares predicted secondary structures to a library of structural families of proteins, using HMMs. Altogether...

... algorithm, called convex constraint analysis, has been developed to deduce the chiral contribution of the common secondary structures directly from experimental CD curves of a large number of proteins. The analysis is based on CD data reported by Yang J.T., Wu,C.-S.C. and Martinez,H.M. [Methods...

... for RNA folding maps. compatible sequences edge-isoperimetric inequality genetic drift neutral evolution orbits secondary structures white noise computation zero-one law 271 The fundamental mechanisms of biological evolution have fascinated generations of researchers and remain popular to this day...