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Keywords: domestication
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Journal Article
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Genome-wide association mapping dissects the selective breeding of determinacy and photoperiod sensitivity in common bean (Phaseolus vulgaris L.)
Kate E Denning-James and others
G3 Genes|Genomes|Genetics, jkaf090, https://doi.org/10.1093/g3journal/jkaf090
Published: 19 April 2025
... early selected during the domestication of both Mesoamerican and Andean gene pools. Still, significant variation exists among common bean landraces for these traits. Since landraces form the basis for trait introgression in pre-breeding, understanding these traits’ genetic underpinnings and relation...
Journal Article
Parallel Selection in Domesticated Atlantic Salmon from Divergent Founders Including on Whole-Genome Duplication-derived Homeologous Regions
Pauline Buso and others
Genome Biology and Evolution, Volume 17, Issue 4, April 2025, evaf063, https://doi.org/10.1093/gbe/evaf063
Published: 18 April 2025
...://creativecommons.org/licenses/by/4.0/ ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Domestication and artificial selection for desirable traits have driven significant phenotypic changes and left detectable genomic footprints...
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Molecular polymorphisms of the nuclear and chloroplast genomes among African melon germplasms reveal abundant and unique genetic diversity, especially in Sudan
Odirichi Nnennaya Imoh and others
Annals of Botany, mcaf028, https://doi.org/10.1093/aob/mcaf028
Published: 17 April 2025
... and small seed-type from Western and Southern Africa. Both seed types are common in Sudan. Molecular genetic diversity in these geographical populations was as high as in India, the Asian center of melon domestication. Large seed-type from Northern Africa were assigned to Pop4 by structure analysis and had...
Journal Article
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Photoperiod insensitivity in crops
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Alberto González-Delgado and others
Journal of Experimental Botany, eraf153, https://doi.org/10.1093/jxb/eraf153
Published: 09 April 2025
... photoperiodic adaptability. Circadian clock Domestication Flowering time Mutation Photoperiodism Accepted Manuscript Photoperiod insensitivity in crops Alberto González-Delgado1 Félix J Martínez-Rivas1,2 José M Jiménez-Gómez1* 1 Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de...
Journal Article
Population Genomics of Aspergillus sojae is Shaped by the Food Environment
Kimberly L Acevedo and others
Genome Biology and Evolution, Volume 17, Issue 4, April 2025, evaf067, https://doi.org/10.1093/gbe/evaf067
Published: 08 April 2025
... to thrive in starch-rich conditions compared to its wild ancestor, Aspergillus flavus. Similarly, Aspergillus sojae, used in soybean-based fermentations like miso and shochu, is hypothesized to have been domesticated from Aspergillus parasiticus. Here, we examined the effects...
Journal Article
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A divergent haplotype with a large deletion at the berry color locus causes a white-skinned phenotype in grapevine
Jean-Sébastien Reynard and others
Horticulture Research, uhaf069, https://doi.org/10.1093/hr/uhaf069
Published: 06 March 2025
..., and one non-functional subhaplotype, HapFDEL, responsible for white-skinned phenotype. HapF1 likely originated from wild populations domesticated in the Near East and subsequently spread globally with the expansion of viticulture. In contrast, HapF2 has a more restricted distribution and may...
Journal Article
New crops on the block: effective strategies to broaden our food, fibre, and fuel repertoire in the face of increasingly volatile agricultural systems
Aaron Phillips and others
Journal of Experimental Botany, eraf023, https://doi.org/10.1093/jxb/eraf023
Published: 27 February 2025
...-emerging, and new crops, highlighting the challenges of developing and maintaining new arrivals in the global market. We analyse the potential of wild relatives for improving domesticated crops, or as candidates for de novo domestication. The importance of pangenomes for uncovering genetic...
Journal Article
Multiple Domestication Centers of the Indian Pig Population
Shailesh Desai and others
Genome Biology and Evolution, Volume 17, Issue 3, March 2025, evaf030, https://doi.org/10.1093/gbe/evaf030
Published: 25 February 2025
... suggests their predominance in North India, where they are depicted in various contexts, e.g. hunting, deification, and domestication from the Mesolithic to the historical period ( supplementary tables S3A and S3B, Supplementary Material online). The rock art pattern also suggests they were hunted...
Journal Article
Genetic and Anatomical Determinants of Olfaction in Dogs and Wild Canids
Alice Mouton and others
Molecular Biology and Evolution, Volume 42, Issue 3, March 2025, msaf035, https://doi.org/10.1093/molbev/msaf035
Published: 14 February 2025
... [email protected]. Abstract Understanding the anatomical and genetic basis of complex phenotypic traits has long been a challenge for biological research. Domestic dogs offer a compelling model as they demonstrate more phenotypic variation than any other vertebrate species. Dogs have been intensely...
Journal Article
Importance, structure, cultivability, and resilience of the bacterial microbiota during infection of laboratory-grown Haematococcus spp. by the blastocladialean pathogen Paraphysoderma sedebokerense: evidence for a domesticated microbiota and its potential for biocontrol
Jeanne Miebach and others
FEMS Microbiology Ecology, Volume 101, Issue 2, February 2025, fiaf011, https://doi.org/10.1093/femsec/fiaf011
Published: 20 January 2025
... sedebokerense unveils evidence for a domesticated microbiota, the structure, resilience, and cultivability of which opens new perspectives for biocontrol. 11 10 2024 18 12 2024 17 01 2025 05 02 2025 © The Author(s) 2025. Published by Oxford University Press on behalf...
Journal Article
Taming the wild: domesticating untapped northern fruit tree and shrub resources in the era of high-throughput technologies
Jérôme Gélinas Bélanger
in
AoB PLANTS
AoB PLANTS, Volume 17, Issue 1, January 2025, plae074, https://doi.org/10.1093/aobpla/plae074
Published: 04 January 2025
...Jérôme Gélinas Bélanger; Colleen Doherty Table 1. Selected publications highlighting the use of CRISPR-Cas9 to edit domestication genes in perennial and annual fruiting crops. Trait Species Gene acronym Gene name Effect Reference Dormancy Modification of plant architecture...
Journal Article
Unravelling the impact of domestication on competitive ability in durum wheat: a phenotypic plasticity perspective
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Taïna Lemoine and others
Journal of Experimental Botany, Volume 76, Issue 4, 25 February 2025, Pages 1300–1313, https://doi.org/10.1093/jxb/erae480
Published: 14 December 2024
... of domestication on plant traits is frequently highlighted in modern agriculture. It is often argued that domesticated plants have lost competitive ability due to reduced phenotypic plasticity. This study investigates whether domestication has affected competitive ability, functional trait values, and plasticity...
Journal Article
A Graph-based Goat Pangenome Reveals Structural Variations Involved in Domestication and Adaptation
Peipei Bian and others
Molecular Biology and Evolution, Volume 41, Issue 12, December 2024, msae251, https://doi.org/10.1093/molbev/msae251
Published: 12 December 2024
... of 79 wild and 1,148 worldwide domestic goats. Selection signal analysis of SV captured a novel immune-related domestication locus containing the galectin-9 gene and extra copies of the ruminant-specific galectin-9-like genes (LGALS9L), which have high tissue specificity. A segmental...
Journal Article
Paralogous Gene Recruitment in Multiple Families Constitutes Genetic Architecture and Robustness of Pod Dehiscence in Legumes
Bin Yong and others
Genome Biology and Evolution, Volume 16, Issue 12, December 2024, evae267, https://doi.org/10.1093/gbe/evae267
Published: 07 December 2024
... via the Permissions link on the article page on our site—for further information please contact [email protected]. Abstract Pod dehiscence facilitates seed dispersal in wild legumes while indehiscence is a key domestication trait in cultivated ones. However, the evolutionary genetic...
Journal Article
Use of anthropogenic landscapes in a wild Columba livia (Rock Dove) population
William J Smith and others
in
Ornithology
Ornithology, Volume 142, Issue 1, 1 January 2025, ukae050, https://doi.org/10.1093/ornithology/ukae050
Published: 05 December 2024
..., distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact [email protected]. ABSTRACT Despite the role of many domestic animals as model organisms, our understanding of their undomesticated conspecifics is comparatively poor...
Journal Article
Evolution of NAC transcription factors from early land plants to domesticated crops
Taehoon Kim and others
Plant and Cell Physiology, pcae133, https://doi.org/10.1093/pcp/pcae133
Published: 12 November 2024
... adaptation and crop domestication. Using representative members of green algae, bryophytes, lycophytes, gymnosperms, and angiosperms, we expanded the evolutionary history of NAC transcription factors to unveil the relationships among members of this gene family. We found a massive increase in the number...
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A quest for the potato of the future: characterization of wild tuber-bearing Solanum species for de novo domestication
Aristotelis Azariadis and others
Journal of Experimental Botany, Volume 76, Issue 4, 25 February 2025, Pages 1011–1031, https://doi.org/10.1093/jxb/erae453
Published: 08 November 2024
... by bridge crosses and changes in ploidy requiring a lengthy and tedious process ( Yermishin et al., 2014 ). Therefore, instead of introducing R genes from WTB Solanum species into cultivated potato, a better strategy could be to confer domestication traits to the already stress-tolerant...
Journal Article
Maroon Rice Genomic Diversity Reflects 350 Years of Colonial History
Marieke S van de Loosdrecht and others
Molecular Biology and Evolution, Volume 41, Issue 10, October 2024, msae204, https://doi.org/10.1093/molbev/msae204
Published: 28 October 2024
... findings underline many Maroon stories about their past. We anticipate that a similar study approach can be applied to other heirloom crops of (Indigenous) communities that may have preserved their history on their farms to reconstruct, acknowledge, and honor the past. rice Maroon history domestication...
Journal Article
The Population History of Domestic Sheep Revealed by Paleogenomes
Damla Kaptan and others
Molecular Biology and Evolution, Volume 41, Issue 10, October 2024, msae158, https://doi.org/10.1093/molbev/msae158
Published: 22 October 2024
... article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/ ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Sheep was one of the first domesticated...
Journal Article
Enhancing photosynthetic phosphorus use efficiency through coordination of leaf phosphorus fractions, allocation, and anatomy during soybean domestication
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Geng Chen and others
Journal of Experimental Botany, Volume 76, Issue 5, 13 March 2025, Pages 1446–1457, https://doi.org/10.1093/jxb/erae427
Published: 13 October 2024
... Soybean domestication has significantly changed key agronomic traits, yet its impact on leaf photosynthetic phosphorus use efficiency (PPUE) and its underlying traits remains poorly known. Further information on this would be important to increase soybean P use efficiency. To address this gap, 48 soybean...
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