... title: Dinoflagellates expand in warming oceans © The Author(s) 2025. Published by Oxford University Press on behalf of the International Society for Microbial Ecology 1 UNCORRECTED MANUSCRIPT Key words: Dinoflagellate; Sedimentary ancient DNA; Harmful algal bloom; climate warming; human activity; South...

... background is to be a consideration for reintroduction efforts in California, brown bears from Yellowstone might serve as a source population. extinction reintroduction ancient DNA population genomics brown bears Accepted Manuscript Genomic data from the extinct California brown bear suggests a source...

... the concerned populations. Samples were processed at the Paléogénomique et Génétique Moléculaire ancient DNA platform from the Muséum National d’Histoire Naturelle in Paris, France. Swab samples (dry and/or moistened with DNAse-free water) were taken from the surface or inside of 19 sheaths from Vanuatu, Papua...

... heterozygosity has decreased through time and unveil previously uncharacterized mitochondrial haplotypes and nuclear genotypes in the historic dataset, which are absent from today's koala populations. Koalas population genomics conservation genomics ancient DNA The current biodiversity crisis is marked...

... variation can be explained by sexual dimorphism. Arctodus simus phylogeography sexual dimorphism ancient DNA Australian Research Council Laureate Fellowship FL140100260 U.S. National Science Foundation 10.13039/100000001 EAR/SGP#1425059 The giant short-faced bear, Arctodus simus...

.... Various methods have been developed to utilize IBD sharing for demographic inference in contemporary DNA data. Recent methodological advances have extended the screening for IBD segments to ancient DNA (aDNA) data, making demographic inference based on IBD also possible for aDNA. However, aDNA data...

..., and reproduction in any medium, provided the original work is properly cited. Abstract A common problem when analyzing ancient DNA data is to identify the species that corresponds to the recovered analyzing ancient DNA sequence(s). The standard approach is to deploy sequence similarity-based tools, such as BLAST...

...Shyamsundar Ravishankar; Vilma Perez; Roberta Davidson; Xavier Roca-Rada; Divon Lan; Yassine Souilmi; Bastien Llamas Corresponding author. Australian Centre for Ancient DNA (ACAD) and The Environment Institute, The School of Biological Sciences, The University of Adelaide, North Terrace, Adelaide...

... for dispersal and admixture, sometimes being paralleled by their shepherds and in other cases not. domestication paleogenetics sheep ancient DNA Mouflon whole-genome sequencing introgression European Research Council 10.13039/501100000781 772390 (952317 111T464 114Z356 1929B011800100...

... Publication Model ( https://dbpia.nl.go.kr/pages/standard-publication-reuse-rights ) Abstract Specimen-based taxonomic research is essential for understanding diversity and setting management frameworks for threatened mammal faunas, and ancient DNA techniques are increasingly used to extract information...

...-level admixture events when inferring demographic history using f-statistics. demographic inference f-statistics admixture deep ancestry ancient DNA In this model ( Fig. 2 ), one would naively anticipate f₄(O, A; B, X) values to be negative since...

.... 2013 ; Jones et al. 2015 ) is 0.43% and the average misincorporation of C > T in the first five base pairs (bp) is 8.11% ( supplementary Data S1a, Supplementary Material online). This range of these values is typical for ancient DNA. We studied the ancestry of 33 Late Iron Age...

... in more modern periods. ARGs ancient DNA selection HMMs lactase persistence One of the primary evolutionary forces that shapes the genetic variation of populations is natural selection, the causal effect of genotype on the reproductive success of an individual. While experimental evolution studies...

... article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/ ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. Over the past decade, advances in ancient DNA...

.... The general pattern of runs-of-homozygosity (ROH) is comparable to the results for the pairwise mismatches with ASTF002 falling toward the lower end of modern NEST groups but we do not want to draw broader conclusions from this single sample ( Fig. 5c and d ). sheep ancient DNA Baltic breeds...

... domesticated during the Last Glacial Maximum (LGM) in Siberia, which contrasts with previous proposed domestication centers (e.g. Europe, the Middle East, and East Asia). Ancient DNA provides a powerful resource for the study of mammalian evolution and has been widely used to understand the genetic history...

... substantially affected the expression of several nearby genes. Our work demonstrates the utility in incorporating functional information into genome-wide scans for selection. Ancient DNA (aDNA) time series can provide direct evidence of natural selection on specific variants, avoiding confounding factors...

.... In this study, we make use of exceptionally well-preserved ancient DNA from a unique set of Adélie penguin samples reported here for the first time and genotype 177,974 microsatellites of periods 2 to 6 in both modern and ancient genomes, including some dating to ∼46.5 ka. In addition, we are able to time...

..., and reproduction in any medium, provided the original work is properly cited. phytoplankton zooplankton sedimentary ancient DNA paleoecology Bering Sea marine ecosystem carbon cycle German Ministry of Education and Research 03G0672A Recent global warming is known to alter marine phytoplankton [ 1...