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Authors: Enrico Petretto
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Journal Article

scPanel: a tool for automatic identification of sparse gene panels for generalizable patient classification using scRNA-seq datasets Open Access

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Yi Xie and others
Briefings in Bioinformatics, Volume 25, Issue 6, November 2024, bbae482, https://doi.org/10.1093/bib/bbae482
Published: 30 September 2024
Journal Article

PPMS: A framework to Profile Primary MicroRNAs from Single-cell RNA-sequencing datasets Open Access

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Jiahui Ji and others
Briefings in Bioinformatics, Volume 23, Issue 6, November 2022, bbac419, https://doi.org/10.1093/bib/bbac419
Published: 08 October 2022
Journal Article

Brugada syndrome genetics is associated with phenotype severity Open Access

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Giuseppe Ciconte and others
European Heart Journal, Volume 42, Issue 11, 14 March 2021, Pages 1082–1090, https://doi.org/10.1093/eurheartj/ehaa942
Published: 21 November 2020
Journal Article

Implication of sestrin3 in epilepsy and its comorbidities Open Access

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Francesca Lovisari and others
Brain Communications, Volume 3, Issue 1, 2021, fcaa130, https://doi.org/10.1093/braincomms/fcaa130
Published: 09 October 2020
Journal Article

Ethnicity-Specific Skeletal Muscle Transcriptional Signatures and Their Relevance to Insulin Resistance in Singapore Free

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Amelia Li Min Tan and others
The Journal of Clinical Endocrinology & Metabolism, Volume 104, Issue 2, February 2019, Pages 465–486, https://doi.org/10.1210/jc.2018-00309
Published: 21 August 2018
Journal Article

MWASTools: an R/bioconductor package for metabolome-wide association studies Open Access

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Andrea Rodriguez-Martinez and others
Bioinformatics, Volume 34, Issue 5, March 2018, Pages 890–892, https://doi.org/10.1093/bioinformatics/btx477
Published: 26 July 2017
Journal Article

Identification of Ceruloplasmin as a Gene that Affects Susceptibility to Glomerulonephritis Through Macrophage Function Free

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Tai-Di Chen and others
Genetics, Volume 206, Issue 2, 1 June 2017, Pages 1139–1151, https://doi.org/10.1534/genetics.116.197376
Published: 01 June 2017
Journal Article

A Bayesian Approach for Analysis of Whole-Genome Bisulfite Sequencing Data Identifies Disease-Associated Changes in DNA Methylation Free

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Owen J L Rackham and others
Genetics, Volume 205, Issue 4, 1 April 2017, Pages 1443–1458, https://doi.org/10.1534/genetics.116.195008
Published: 01 April 2017
Journal Article

MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues Open Access

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Alex Lewin and others
Bioinformatics, Volume 32, Issue 4, February 2016, Pages 523–532, https://doi.org/10.1093/bioinformatics/btv568
Published: 26 October 2015
Journal Article

Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data Open Access

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Juan J. Diaz-Montana and others
Bioinformatics, Volume 32, Issue 4, February 2016, Pages 635–637, https://doi.org/10.1093/bioinformatics/btv598
Published: 21 October 2015
Journal Article

Macrophage Epoxygenase Determines a Profibrotic Transcriptome Signature Get access

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Jacques Behmoaras and others
The Journal of Immunology, Volume 194, Issue 10, May 2015, Pages 4705–4716, https://doi.org/10.4049/jimmunol.1402979
Published: 15 May 2015
Journal Article

WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools Open Access

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Owen J. L. Rackham and others
Bioinformatics, Volume 31, Issue 14, July 2015, Pages 2371–2373, https://doi.org/10.1093/bioinformatics/btv114
Published: 15 March 2015
Journal Article

EvoTol: a protein-sequence based evolutionary intolerance framework for disease-gene prioritization Open Access

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Owen J. L. Rackham and others
Nucleic Acids Research, Volume 43, Issue 5, 11 March 2015, Page e33, https://doi.org/10.1093/nar/gku1322
Published: 29 December 2014
Journal Article

Genetic Influences on Brain Gene Expression in Rats Selected for Tameness and Aggression Free

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Henrike O Heyne and others
Genetics, Volume 198, Issue 3, 1 November 2014, Pages 1277–1290, https://doi.org/10.1534/genetics.114.168948
Published: 03 September 2014
Journal Article

Leveraging gene co-expression networks to pinpoint the regulation of complex traits and disease, with a focus on cardiovascular traits Free

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Maxime Rotival and Enrico Petretto
Briefings in Functional Genomics, Volume 13, Issue 1, January 2014, Pages 66–78, https://doi.org/10.1093/bfgp/elt030
Published: 19 August 2013
Journal Article
EDITOR'S CHOICE

Systems-level approaches reveal conservation of trans-regulated genes in the rat and genetic determinants of blood pressure in humans Get access

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Sarah R. Langley and others
Cardiovascular Research, Volume 97, Issue 4, 15 March 2013, Pages 653–665, https://doi.org/10.1093/cvr/cvs329
Published: 31 October 2012
Journal Article
EDITOR'S CHOICE

Integrative genomics in cardiovascular medicine Get access

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James S. Ware and others
Cardiovascular Research, Volume 97, Issue 4, 15 March 2013, Pages 623–630, https://doi.org/10.1093/cvr/cvs303
Published: 27 September 2012
Journal Article

Bayesian Detection of Expression Quantitative Trait Loci Hot Spots Free

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Leonardo Bottolo and others
Genetics, Volume 189, Issue 4, 1 December 2011, Pages 1449–1459, https://doi.org/10.1534/genetics.111.131425
Published: 01 December 2011
Journal Article

FCGR3B copy number variation is associated with systemic lupus erythematosus risk in Afro-Caribbeans Get access

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Mariam Molokhia and others
Rheumatology, Volume 50, Issue 7, July 2011, Pages 1206–1210, https://doi.org/10.1093/rheumatology/keq456
Published: 04 February 2011
Journal Article

ESS++: a C++ objected-oriented algorithm for Bayesian stochastic search model exploration Open Access

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Leonardo Bottolo and others
Bioinformatics, Volume 27, Issue 4, February 2011, Pages 587–588, https://doi.org/10.1093/bioinformatics/btq684
Published: 13 January 2011