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Authors: Detlef Weigel
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Journal Article

TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data Open Access

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Wenfei Xian and others
Molecular Biology and Evolution, Volume 42, Issue 1, January 2025, msae247, https://doi.org/10.1093/molbev/msae247
Published: 13 January 2025
Journal Article

Gretl—variation GRaph Evaluation TooLkit Open Access

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Sebastian Vorbrugg and others
Bioinformatics, Volume 41, Issue 1, January 2025, btae755, https://doi.org/10.1093/bioinformatics/btae755
Published: 24 December 2024
Journal Article

Diploid genome assembly of the Malbec grapevine cultivar enables haplotype-aware analysis of transcriptomic differences underlying clonal phenotypic variation Open Access

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Luciano Calderón and others
Horticulture Research, Volume 11, Issue 5, May 2024, uhae080, https://doi.org/10.1093/hr/uhae080
Published: 14 March 2024
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FEATURED

Deleterious phenotypes in wild Arabidopsis arenosa populations are common and linked to runs of homozygosity Open Access

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A Cristina Barragan and others
G3 Genes|Genomes|Genetics, Volume 14, Issue 3, March 2024, jkad290, https://doi.org/10.1093/g3journal/jkad290
Published: 20 December 2023
Journal Article

Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes Open Access

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Fernando A Rabanal and others
Nucleic Acids Research, Volume 50, Issue 21, 28 November 2022, Pages 12309–12327, https://doi.org/10.1093/nar/gkac1115
Published: 01 December 2022
Journal Article

PICLN modulates alternative splicing and light/temperature responses in plants Free

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Julieta L Mateos and others
Plant Physiology, Volume 191, Issue 2, February 2023, Pages 1036–1051, https://doi.org/10.1093/plphys/kiac527
Published: 24 November 2022
Journal Article

Rapid genomic convergent evolution in experimental populations of Trinidadian guppies (Poecilia reticulata) Open Access

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Mijke J. van der Zee and others
Evolution Letters, Volume 6, Issue 2, 1 April 2022, Pages 149–161, https://doi.org/10.1002/evl3.272
Published: 01 April 2022
Journal Article

Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms Open Access

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Or Shalev and others
The ISME Journal, Volume 16, Issue 5, May 2022, Pages 1235–1244, https://doi.org/10.1038/s41396-021-01168-6
Published: 11 December 2021
Journal Article

vcf2gwas: Python API for comprehensive GWAS analysis using GEMMA Open Access

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Frank Vogt and others
Bioinformatics, Volume 38, Issue 3, February 2022, Pages 839–840, https://doi.org/10.1093/bioinformatics/btab710
Published: 12 October 2021
Journal Article

Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia Open Access

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Gautam Shirsekar and others
Molecular Biology and Evolution, Volume 38, Issue 12, December 2021, Pages 5328–5344, https://doi.org/10.1093/molbev/msab268
Published: 09 September 2021
Journal Article

Plant NLR diversity: the known unknowns of pan-NLRomes Free

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A Cristina Barragan and Detlef Weigel
The Plant Cell, Volume 33, Issue 4, April 2021, Pages 814–831, https://doi.org/10.1093/plcell/koaa002
Published: 02 February 2021
Journal Article

A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana Open Access

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Ana Cristina Barragan and others
Molecular Biology and Evolution, Volume 38, Issue 2, February 2021, Pages 557–574, https://doi.org/10.1093/molbev/msaa245
Published: 23 September 2020
Journal Article

Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata) Open Access

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Bonnie A Fraser and others
Genome Biology and Evolution, Volume 12, Issue 10, October 2020, Pages 1789–1805, https://doi.org/10.1093/gbe/evaa187
Published: 27 August 2020
Journal Article

Draft Genomes of Amaranthus tuberculatus, Amaranthus hybridus, and Amaranthus palmeri Open Access

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Jacob S Montgomery and others
Genome Biology and Evolution, Volume 12, Issue 11, November 2020, Pages 1988–1993, https://doi.org/10.1093/gbe/evaa177
Published: 24 August 2020
Journal Article

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves Open Access

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Julian Regalado and others
The ISME Journal, Volume 14, Issue 8, August 2020, Pages 2116–2130, https://doi.org/10.1038/s41396-020-0665-8
Published: 13 May 2020
Journal Article
HIGHLIGHTED ARTICLE

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features Free

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Beth A Rowan and others
Genetics, Volume 213, Issue 3, 1 November 2019, Pages 771–787, https://doi.org/10.1534/genetics.119.302406
Published: 01 November 2019
Journal Article

AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana Open Access

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Matteo Togninalli and others
Nucleic Acids Research, Volume 48, Issue D1, 08 January 2020, Pages D1063–D1068, https://doi.org/10.1093/nar/gkz925
Published: 23 October 2019
Journal Article

All in the Family: The First Whole-Genome Survey of NLR Genes Open Access

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Detlef Weigel
The Plant Cell, Volume 31, Issue 6, June 2019, Pages 1212–1213, https://doi.org/10.1105/tpc.19.00309
Published: 12 June 2019
Journal Article

Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana Free

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Mao-Lun Weng and others
Genetics, Volume 211, Issue 2, 1 February 2019, Pages 703–714, https://doi.org/10.1534/genetics.118.301721
Published: 04 December 2018
Journal Article

Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana Free

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Cristina M Alexandre and others
Molecular Biology and Evolution, Volume 35, Issue 4, April 2018, Pages 837–854, https://doi.org/10.1093/molbev/msx326
Published: 20 December 2017