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Authors: A Haendel
Journal Article
The Unified Phenotype Ontology : a framework for cross-species integrative phenomics Open Access
in
Genetics
Genetics, Volume 229, Issue 3, March 2025, iyaf027, https://doi.org/10.1093/genetics/iyaf027
Published: 06 March 2025
Journal Article
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning Open Access
Bioinformatics, Volume 40, Issue 3, March 2024, btae104, https://doi.org/10.1093/bioinformatics/btae104
Published: 21 February 2024
Journal Article
Effectiveness of mRNA Booster Vaccine Against Coronavirus Disease 2019 Infection and Severe Outcomes Among Persons With and Without Immune Dysfunction: A Retrospective Cohort Study of National Electronic Medical Record Data in the United States Open Access
Open Forum Infectious Diseases, Volume 11, Issue 2, February 2024, ofae019, https://doi.org/10.1093/ofid/ofae019
Published: 11 January 2024
Journal Article
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species Open Access
Nucleic Acids Research, Volume 52, Issue D1, 5 January 2024, Pages D938–D949, https://doi.org/10.1093/nar/gkad1082
Published: 24 November 2023
Journal Article
The Human Phenotype Ontology in 2024: phenotypes around the world Open Access
Nucleic Acids Research, Volume 52, Issue D1, 5 January 2024, Pages D1333–D1346, https://doi.org/10.1093/nar/gkad1005
Published: 11 November 2023
Journal Article
Who is pregnant? Defining real-world data-based pregnancy episodes in the National COVID Cohort Collaborative (N3C) Open Access
in
JAMIA Open
JAMIA Open, Volume 6, Issue 3, October 2023, ooad067, https://doi.org/10.1093/jamiaopen/ooad067
Published: 16 August 2023
Journal Article
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C) Open Access
Journal of the American Medical Informatics Association, Volume 30, Issue 12, December 2023, Pages 2036–2040, https://doi.org/10.1093/jamia/ocad134
Published: 09 August 2023
Journal Article
KG-Hub—building and exchanging biological knowledge graphs Open Access
Bioinformatics, Volume 39, Issue 7, July 2023, btad418, https://doi.org/10.1093/bioinformatics/btad418
Published: 30 June 2023
Journal Article
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset Open Access
Journal of the American Medical Informatics Association, Volume 29, Issue 7, July 2022, Pages 1172–1182, https://doi.org/10.1093/jamia/ocac054
Published: 18 April 2022
Journal Article
Sleep and circadian informatics data harmonization: a workshop report from the Sleep Research Society and Sleep Research Network Free
in
Sleep
Sleep, Volume 45, Issue 6, June 2022, zsac002, https://doi.org/10.1093/sleep/zsac002
Published: 14 January 2022
Journal Article
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative Open Access
Journal of the American Medical Informatics Association, Volume 29, Issue 4, April 2022, Pages 609–618, https://doi.org/10.1093/jamia/ocab217
Published: 02 November 2021
Journal Article
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies Open Access
in
Database
Database, Volume 2021, 2021, baab069, https://doi.org/10.1093/database/baab069
Published: 26 October 2021
Journal Article
The Human Phenotype Ontology in 2021 Open Access
Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D1207–D1217, https://doi.org/10.1093/nar/gkaa1043
Published: 02 December 2020
Journal Article
The case for open science: rare diseases Open Access
in
JAMIA Open
JAMIA Open, Volume 3, Issue 3, October 2020, Pages 472–486, https://doi.org/10.1093/jamiaopen/ooaa030
Published: 11 September 2020
Journal Article
FEATURED
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment Open Access
Journal of the American Medical Informatics Association, Volume 28, Issue 3, March 2021, Pages 427–443, https://doi.org/10.1093/jamia/ocaa196
Published: 17 August 2020
Journal Article
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery Open Access
in
Database
Database, Volume 2019, 2019, baz114, https://doi.org/10.1093/database/baz114
Published: 18 November 2019
Journal Article
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species Open Access
Nucleic Acids Research, Volume 48, Issue D1, 08 January 2020, Pages D704–D715, https://doi.org/10.1093/nar/gkz997
Published: 08 November 2019
Journal Article
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources Open Access
Nucleic Acids Research, Volume 47, Issue D1, 08 January 2019, Pages D1018–D1027, https://doi.org/10.1093/nar/gky1105
Published: 22 November 2018
Journal Article
Frequency-dependent quality factors from the deconvolution of ambient noise recordings in a borehole in West Bohemia/Vogtland Free
Geophysical Journal International, Volume 216, Issue 1, January 2019, Pages 251–260, https://doi.org/10.1093/gji/ggy422
Published: 12 October 2018
Journal Article
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species Open Access
Nucleic Acids Research, Volume 45, Issue D1, January 2017, Pages D712–D722, https://doi.org/10.1093/nar/gkw1128
Published: 29 November 2016
