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Plant Physiology Cover Image for Volume 171, Issue 4
Volume 171, Issue 4
August 2016
ISSN 0032-0889
EISSN 1532-2548

Volume 171, Issue 4, August 2016

ON THE INSIDE

Peter V. Minorsky
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2277–2278, https://doi.org/10.1104/pp.16.01093

COMMENTARY

Bram Van de Poel and Caren Chang
Plant Physiology, Volume 171, Issue 4, August 2016, Page 2279, https://doi.org/10.1104/pp.16.00957

TOPICAL REVIEWS

Kenji Nishimura and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2280–2293, https://doi.org/10.1104/pp.16.00330

Homeostasis and remodeling of the chloroplast proteome involve various “processing” and “processive” proteases.

Nicholas Panchy and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2294–2316, https://doi.org/10.1104/pp.16.00523

Gene duplicates are prevalent in plants and in some cases contribute to evolutionary novelty.

BREAKTHROUGH TECHNOLOGIES

Giovanna Loro and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2317–2330, https://doi.org/10.1104/pp.16.00652

Plants expressing a chloroplast-localized Cameleon Ca2+ probe allow single-organelle analysis of chloroplast Ca2+ dynamics.

Tzu-Ching Wu and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2331–2342, https://doi.org/10.1104/pp.15.00972

LobeFinder, a new convex hull-based cell phenotyping tool, creates a coordinate system for cell boundary changes and detects lobe positions in epidermal pavement cells.

Malay Das and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2343–2357, https://doi.org/10.1104/pp.15.01207

Expressologs identify functional orthologs and will be a powerful tool in future orthology assignment.

SCIENTIFIC CORRESPONDENCE

Lawren Sack and Thomas N. Buckley
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2358–2363, https://doi.org/10.1104/pp.16.00476

Equations for stomatal density and maximum theoretical stomatal conductance as functions of stomatal initiation rate, epidermal cell size, and stomatal size enable scaling from development to flux.

Debabrata Laha and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2364–2370, https://doi.org/10.1104/pp.16.00694

Inositol polyphosphate binding specificity of the jasmonate receptor is largely determined by the F-box protein COI1.

RESEARCH REPORT

Inês Carqueijeiro and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2371–2378, https://doi.org/10.1104/pp.16.01028

Idioblasts from Catharanthus roseus leaves specifically accumulate alkaloids and show autofluorescence that enabled the fluorescence-activated cell sorting of a population of idioblast protoplasts.

UPDATE

Chao Li and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2379–2392, https://doi.org/10.1104/pp.16.00667

Current research into the FERONIA family of receptor kinases highlights both questions and opportunities for understanding signaling strategies in plant growth and survival.

Articles

BIOCHEMISTRY AND METABOLISM

Damien Sorigué and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2393–2405, https://doi.org/10.1104/pp.16.00462

A pathway converting C16 and C18 fatty acids to alkanes or alkenes, involving the light-dependent transformation of cis-vaccenic acid into 7-heptadecene, is present in various microalgae.

Hugh Douglas Goold and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2406–2417, https://doi.org/10.1104/pp.16.00718

Saturating light induces oil storage in Chlamydomonas reinhardtii, and the newly formed oil accumulates in lipid droplets distinct in protein and lipid compositions from those induced by nitrogen starvation.

Marta Busse-Wicher and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2418–2431, https://doi.org/10.1104/pp.16.00539

The xylan decoration pattern in all lineages of gymnosperms permits hydrogen bonding of xylan to cellulose.

Somnuk Bunsupa and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2432–2444, https://doi.org/10.1104/pp.16.00639

Production of plant lysine-derived alkaloids originates with the convergent evolution of lysine decarboxylase.

Matthew T. Juergens and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2445–2457, https://doi.org/10.1104/pp.16.00761

Overflow in triacylglycerol is insufficient to explain carbon storage during nutrient deprivation.

Naoyuki Umemoto and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2458–2467, https://doi.org/10.1104/pp.16.00137

Silencing two cytochome P450 genes reduces steroidal glycoalkaloid content and stops tuber sprouting.

Alessandro Alboresi and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2468–2482, https://doi.org/10.1104/pp.16.00599

Light availability remodels carbon partitioning between organelles toward a greater TAG accumulation in Nannochloropsis gaditana.

Tianhong Yang and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2483–2498, https://doi.org/10.1104/pp.16.00610

Stilbene prenyltransferase that utilizes DMAPP from the plastidic terpenoid pathway shows a high substrate specificity.

Amit Rai and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2499–2515, https://doi.org/10.1104/pp.16.00421

Processes that generate metabolite diversity and reprogram hormone biosynthesis are coordinately regulated to impart stress tolerance in Arabidopsis.

CELL BIOLOGY

Elwira Smakowska and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2516–2535, https://doi.org/10.1104/pp.16.00370

Plants devoid of FTSH4, one of the ATP-dependent metalloproteases in mitochondria, reveal an increased number of abnormal mitochondria, decreased respiratory complexes, and lower amounts of cardiolipins, which is suggested to cause the observed accumulation of oxidative damage.

Nadiatul A. Mohd-Radzman and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2536–2548, https://doi.org/10.1104/pp.16.00113

C-terminally encoded peptides together with the CRA2 receptor regulate nodulation and lateral root development through ethylene-dependent and ethylene-independent pathways, respectively, in Medicago truncatula.

ECOPHYSIOLOGY AND SUSTAINABILITY

Carmen Hermida-Carrera and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2549–2561, https://doi.org/10.1104/pp.16.01846

Variability in Rubisco kinetic parameters and their temperature dependency demonstrate differences in photosynthetic efficiency in the most important crops worldwide.

Nitika Sandhu and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2562–2576, https://doi.org/10.1104/pp.16.00705

Rice root genetic regions determining root architectural plasticity can be used for selection of improved adaptability to variable conditions.

Georgia Tooulakou and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2577–2585, https://doi.org/10.1104/pp.16.00111

A new photosynthetic path named “alarm photosynthesis” uses mesophyll calcium oxalate crystals as the CO2 source when stomata are closed, providing adaptive advantages under drought conditions.

GENES, DEVELOPMENT, AND EVOLUTION

Jan Van de Velde and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2586–2598, https://doi.org/10.1104/pp.16.00821

Comparative sequence analysis delineates conserved noncoding sequences that are functionally relevant, a subset of which are conserved throughout green plants.

Shahzad A. Pandith and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2599–2619, https://doi.org/10.1104/pp.16.00003

Evolutionary and functional divergence of gene paralogs expressing polyketide synthases from Rheum emodi play into secondary metabolism and substrate selectivities.

Laura Arribas-Hernández and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2620–2632, https://doi.org/10.1104/pp.16.00231

The majority of miRNA targets require slicer activity of ARGONAUTE1 for repression at the mRNA level.

Norman B. Best and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2633–2647, https://doi.org/10.1104/pp.16.00399

nana plant2 encodes an enzyme in the brassinosteroid biosynthetic pathway, and brassinosteroid and gibberellin interact in a developmentally specific manner to control maize architecture.

Benjamin Beydler and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2648–2658, https://doi.org/10.1104/pp.15.01707

The juvenile phase of maize is correlated with elevated expression of stress-related genes.

Yong Xiang and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2659–2670, https://doi.org/10.1104/pp.16.00525

DELAY OF GERMINATION18 QTL encodes a pseudophosphatase, involved in seed dormancy regulation.

Miguel Nemesio-Gorriz and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2671–2681, https://doi.org/10.1104/pp.16.00685

Two alleles contributing to phenolic secondary metabolism provide markers for pathogen resistance in Norway spruce and have differential effects on resistance.

Su-Chiung Fang and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2682–2700, https://doi.org/10.1104/pp.16.00841

Protocorm-like body development does not utilize the somatic embryogenesis program in Phalaenopsis aphrodite.

David S. Favero and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2701–2716, https://doi.org/10.1104/pp.16.00405

SOB3 modulates seedling elongation by repressing the expression of genes associated with auxin signaling.

MEMBRANES, TRANSPORT, AND BIOENERGETICS

Tania Tibiletti and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2717–2730, https://doi.org/10.1104/pp.16.00572

Photoprotective proteins PsbS and LhcSR3 accumulate rapidly in the photosynthetic membrane of Chlamydomonas during highlight stress with PsbS activating nonphotochemical quenching.

Shota Yamauchi and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2731–2743, https://doi.org/10.1104/pp.16.01581

Mutation of the gene for AHA1, an H+-ATPase isoform, provides new insights into the stomatal regulation of Arabidopsis in response to blue light.

SIGNALING AND RESPONSE

Chunzhao Zhao and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2744–2759, https://doi.org/10.1104/pp.16.00533

The three CBF genes are essential for freezing tolerance and affect seedling development and salt tolerance.

Xin Zhou and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2760–2770, https://doi.org/10.1104/pp.16.00154

The transcription factor AtERF11 promotes stem growth by increasing GA biosynthesis and GA response in Arabidopsis.

Yanjuan Jiang and Diqiu Yu
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2771–2782, https://doi.org/10.1104/pp.16.00747

The negative role of AtWRKY57 in Botrytis infection results from transcriptional competition between transcription factors WRKY57 and WRKY33 and their actions on downstream target JAZ1 and JAZ5 genes.

Jinrui Shi and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2783–2797, https://doi.org/10.1104/pp.16.00347

ARGOS proteins regulate ethylene signal transduction via protein-protein interactions.

Randy F. Lacey and Brad M. Binder
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2798–2809, https://doi.org/10.1104/pp.16.00602

Ethylene modulates the physiology of Synechocystis sp. PCC 6803 via the SynEtr1 ethylene receptor.

Wei Zong and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2810–2825, https://doi.org/10.1104/pp.16.00469

Abscisic acid signaling and biosynthesis are feedback-regulated by transcription factor OsbZIP23 that targets diverse genes involved in drought resilience.

A-Reum Jeong and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2826–2840, https://doi.org/10.1104/pp.16.00342

Characterization of new constitutively active mutants of phytochromes reveals that both biologically active structure and nuclear localization are crucial for the light-independent function in plants.

Sibo Tao and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2841–2853, https://doi.org/10.1104/pp.16.00680

The THO/TREX complex negatively regulates phosphate starvation-induced root-associated acid phosphatase activity by suppressing ethylene signaling in Arabidopsis.

Amit K. Tripathi and others
Plant Physiology, Volume 171, Issue 4, August 2016, Pages 2854–2868, https://doi.org/10.1104/pp.16.00408

A functional H3/H4 histone chaperone mediates abiotic stress adaptation via transcriptional regulation of diverse stress-related genes in rice.

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