
Cover image

Volume 75, Issue 18, 27 September 2024
eXtra Botany
Editorial
Flowering Newsletter 2024
Insights
Stripping off the rice panicle: induced genetic variation awakens the sheathed spikelet for a better yield
This article comments on:
Ballichatla S, Gokulan CG, Barbadikar KM, Hake AA, Potupureddi G, Guha PK, Phule AS, Magar ND, Balija V, Awalellu K, Kokku P, Golla S, Sundaram RM, Padmakumari AP, Laha GS, Senguttuvel P, Lella Venkata SR, Patel HK, Sonti RV, Maganti SM. 2024. Impairment in a member of AP2/ERF and F-box family protein enhances complete panicle exsertion in rice. Journal of Experimental Botany 75, https://doi.org/10.1093/jxb/erae244.
Linking root cell wall width with plant functioning under drought conditions
This article comments on:
Sidhu JS, Lopez-Valdivia I, Strock CF, Schneider HM, Lynch JP. 2024. Cortical parenchyma wall width regulates root metabolic cost and maize performance under suboptimal water availability. Journal of Experimental Botany 75, https://doi.org/10.1093/jxb/erae191.
Time-specific lipid and gene expression responses to chilling stress in panicoid grass
This article comments on:
Kenchanmane Raju SK, Zhang Y, Mahboub S, Ngu DW, Qiu Y, Harmon FG, Schnable JC, Roston RL. 2024. Rhythmic lipid and gene expression responses to chilling in panicoid grasses. Journal of Experimental Botany 75, https://doi.org/10.1093/jxb/erae247
Viewpoints
Slow and rapid auxin responses in Arabidopsis
Revisiting FR13A for submergence tolerance: beyond the SUB1A gene
REVIEW PAPERS
Root hairs: an underexplored target for sustainable cereal crop production
We review current knowledge of genes controlling root hair development in rice, maize, and wheat, and highlight conservation of gene function between monocots and the model dicot species Arabidopsis.
Recent advances in the multifaceted functions of Cys2/His2-type zinc finger proteins in plant growth, development, and stress responses
Together with their structure and classification, the multiple roles played by C2H2-ZFPS in growth regulation, developmental processes, and response mechanisms to abiotic and biotic stresses are reviewed.
Mediator complex: an important regulator of root system architecture
Mediator being the critical component of transcription regulation, functions as a converging point for different signaling pathways. This review highlights the role of Mediator in the regulation of overall root system architecture of plants.
The fusicoccin story revisited
In this review, two questions are addressed: are all effects that fusicoccin has on the physiology of plants the result of H+ -ATPase activation; and do plants produce fusicoccin(-like) molecules?
EXPERT VIEWS
The microbial-driven nitrogen cycle and its relevance for plant nutrition
Nitrogen (N) availability limits plant growth. In the soil and plant environment, microorganisms transform different N compounds and thus determine the presence and quantity of N available for plant nutrition via cooperative or competitive interactions.
New insights into plasmodesmata: complex ‘protoplasmic connecting threads’
Leveraging the latest advances in modern molecular biology, proteomics, and cutting-edge imaging technologies, researchers are delving into the intricate details of plasmodesmata form, formation, and function, revealing essential functions.
TECHNICAL INNOVATIONS
A strategy for studying epigenetic diversity in natural populations: proof of concept in poplar and oak
We developed a strategy and a workflow for quantifying epigenetic diversity in natural populations combining whole-genome and targeted capture sequencing for DNA methylation.
An efficient sulfadiazine selection scheme for stable transformation in the model liverwort Marchantia polymorpha
A sulfonamide-resistance gene enables sulfadiazine-based transformation selection in Marchantia polymorpha , broadening the capacity to genetically manipulate liverworts.
RESEARCH PAPERS
Crop Molecular Genetics
A gain-of-function mutation in BnaIAA13 disrupts vascular tissue and lateral root development in Brassica napus
BnaIAA13 can simultaneously regulate the development of vascular tissues and lateral roots in rapeseed; mutations in this gene have potential as a new germplasm in the rapeseed industry.
Growth and Development
Impairment in a member of AP2/ERF and F-box family protein enhances complete panicle exsertion in rice
Complete panicle exsertion in CPE-109 rice resulted from a missense mutation (T→C) in the sixth exon of the gene for AP2/ERF and a mutation (G→A) at the third exon of a gene encoding an F-box family protein.
Protein kinase SnRK2.6 phosphorylates transcription factor bHLH3 to regulate anthocyanin homeostasis during strawberry fruit ripening
The protein kinase SnRK2.6 phosphorylates bHLH3 to inhibit UFGT expression and consequently suppresses strawberry fruit coloration, indicating that it is a negative regulator in fruit color development and ripening.
The double-edged sword of potassium and sodium fertilization in xylem embolism resistance of two Eucalyptus species under drought stress
Partial K replacement by Na as a drought management strategy in Eucalyptus increases xylem embolism resistance and reveals the trade-offs associated with hydraulic vulnerability and growth.
Green light is similarly effective in promoting plant biomass as red/blue light: a meta-analysis
A meta-analysis of green light effects on plant growth shows minimal effect on biomass but a strong increase in water use efficiency and shoot:root ratio, along with decreased stomatal conductance.
The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants
Cytokinins and the phosphate-related microRNA miR399 accumulate in plants at N satiety in a CRA2 pathway-dependent manner, and systemically inhibit symbiotic nodulation and root development.
Arinole, a novel auxin-stimulating benzoxazole, affects root growth and promotes adventitious root formation
Arinole elevates auxin through induction of biosynthesis, primarily via TRYPTOPHAN AMINOTRANSFERASE1. It can be employed to probe auxin responses and is an interesting tool to induce adventitious roots in various species.
Plant chromosome polytenization contributes to suppression of root growth in high polyploids
This study has elucidated the relationship between chromosome polytenization and growth changes in autopolyploid series of Arabidopsis thaliana , including high polyploids.
Alternate bearing in ‘Hass’ avocado: fruit load-induced changes in bud auxin homeostasis are associated with flowering repression
In the alternate bearing ‘Hass’ avocado cultivar, reduction of auxin release from the apical buds, induced by high-fruit load, is associated with up-regulation of PaTFL1 floral repressor.
Photosynthesis and Metabolism
The role of chloroplast SRP54 domains and its C-terminal tail region in post- and co-translational protein transport in vivo
The chloroplast signal recognition particle subunit cpSRP54 has an important role in the biogenesis of both the light harvesting antenna complex and the cores of photosystem I and II.
Plant—Environment Interactions
Cortical parenchyma wall width regulates root metabolic cost and maize performance under suboptimal water availability
Increased root cortical parenchyma wall width (CPW) reduces root metabolic cost and improves maize adaptation under drought. Modeling also indicates that increased CPW would be beneficial under suboptimal nitrogen availability.
Selenium in soil enhances resistance of oilseed rape to Sclerotinia sclerotiorum by optimizing the plant microbiome
Selenium in soil enhanced oilseed rape resistance to Sclerotinia stem rot by increasing the abundance of beneficial bacteria in the rhizosphere. Beneficial microbes protect plants by activating plant induced systemic resistance.
Rhythmic lipid and gene expression responses to chilling in panicoid grasses
Chilling stress triggers distinct, time-specific lipid and transcriptional responses in cold-tolerant foxtail millet compared with their non-tolerant relatives, elucidating species-specific adaptations, and conserved circadian rhythms across plants.
The wall-associated receptor-like kinase CsWAKL01, positively regulated by the transcription factor CsWRKY53, confers resistance to citrus bacterial canker via regulation of phytohormone signaling
CsWAKL01 positively regulates the levels and signaling of phytohormones, resulting in resistance to citrus canker, and CsWRKY53 functions as a positive regulator of CsWAKL01 to enhance this resistance.
Cotton leaf curl Multan virus subverts the processing of hydroxyproline-rich systemin to suppress tobacco defenses against insect vectors
CLCuMuB βC1 interacts with subtilisin-like protease 1.7 (SBT1.7) and interferes with the processing of preprohydroxyproline-rich systemin B by SBT1.7, thereby attenuating JA signaling and enhancing the performance of whiteflies on plants.
High-resolution methylome analysis uncovers stress-responsive genomic hotspots and drought-sensitive transposable element superfamilies in the clonal Lombardy poplar
In poplar, different abiotic and biotic stresses induce methylation changes in common labile genomic regions, while drought induces global CHH hypermethylation, especially over specific transposon superfamilies located close to drought-responsive genes
Cold tolerance of woodland strawberry (Fragaria vesca) is linked to Cold Box Factor 4 and the dehydrin Xero2
Two woodland strawberry accessions contrasting in cold tolerance were characterized for their responses to cold stress, and Cold Box Factor 4 and Xero2 were identified as predictors for cold tolerance.
Integration of QTL and transcriptome approaches for the identification of genes involved in tomato response to nitrogen deficiency
Tomato response to nitrogen deficiency is genetically controlled by a few QTLs and impacts the expression of many genes, some of which are good targets for breeding varieties requiring less N input.
Arsenic stress triggers active exudation of arsenic–phytochelatin complexes from Lupinus albus roots
Active root exudation of arsenic–phytochelatin complexes in white lupin provides evidence of a new mechanism of arsenic efflux in plants, indicating novel pathways for phytoremediation and food safety.
The transcription factor OsSPL9 endows rice with copper deficiency resilience
The transcription factor OsSPL9 serves as a central regulator of copper homeostasis in rice and endows rice with resilience to copper deficiency.
Strawberry phenotypic plasticity in flowering time is driven by the interaction between genetic loci and temperature
Temperature is the main driver of phenotypic plasticity of flowering time in strawberry, rather than photoperiod and global radiation, and a genetic marker for a major temperature-sensitive QTL was identified.
Capitalizing on genebank core collections for rare and novel disease resistance loci to enhance barley resilience
Novel and rare resistance allele accumulation empowered the selection of promising plant genetic resources, offering potential for targeted pre-breeding goals and enhanced resilience in future varieties
Raffinose catabolism enhances maize waterlogging tolerance by stimulating adventitious root growth and development
Raffinose catabolism stimulates adventitious root formation via the auxin signaling pathway to enhance maize waterlogging tolerance in maize
Testing the evolutionary potential of an alpine plant: phenotypic plasticity in response to growth temperature outweighs parental environmental effects and other genetic causes of variation
We found strong plasticity to growth environment in many phenotypic traits, but little effect of parental environment, revealing the capacity to respond rapidly to climate warming, and potential for evolutionary change
Root plasticity improves maize nitrogen use when nitrogen is limiting: an analysis using 3D plant modelling
Phenotypic plasticity can improve nitrogen uptake by adjusting the vertical distribution of the root system across a range of nitrogen levels.