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Jonathan Albert, Charles L Daley, Philana Ling Lin, Nontuberculous Mycobacterial Infections in Pediatric Solid Organ Transplant and Hematopoietic Cell Transplant Recipients, Journal of the Pediatric Infectious Diseases Society, Volume 13, Issue Supplement_1, February 2024, Pages S58–S67, https://doi.org/10.1093/jpids/piae003
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Abstract
The diagnosis of nontuberculous mycobacterial infections is challenging in pediatric solid organ transplant and hematopoietic cell transplant recipients due to the absence of specific clinical manifestations, limitations of sampling, prolonged times for culture and identification, and difficulty discerning colonization from clinical disease. Treatment is dependent on the nontuberculous mycobacterial species, disease type, and pattern of drug resistance. Treatment of nontuberculous mycobacterial infections involves prolonged durations of therapy using multiple medications, which are limited by toxicities and drug–drug interactions.
INTRODUCTION
Infections with nontuberculous mycobacteria (NTM) are increasingly recognized among solid organ transplant (SOT) and hematopoietic cell transplant (HCT) recipients. Despite this, timely diagnosis remains a challenge as clinical manifestations, laboratory, and radiographic findings of NTM disease are highly variable in immunocompromised hosts. Diagnosis of NTM disease requires a high index of suspicion, knowledge of the laboratory methods necessary to isolate these organisms, and critical evaluation to distinguish colonization and disease. Optimal management of these infections also remains challenging. Treatment of NTM disease requires prolonged courses of multiple antibiotic agents which require careful forethought and management of drug toxicities and interactions with the patient’s existing drug regimen. The infectious diseases clinician must help to guide multidisciplinary, risk-vs-benefit decision-making to balance antimicrobial management with the rest of the patient’s clinical needs. This review will discuss the risk factors, clinical manifestations, diagnosis, and management of NTM disease in SOT and HCT recipients.
EPIDEMIOLOGY AND RISK FACTORS
Though data are limited, pediatric SOT recipients have higher rates of invasive NTM disease than the general population [1, 2]. Risk factors for NTM disease can be categorized into pre- and post-SOT components that reflect deficits in organ function and immune status (Table 1). Lung transplant recipients have the greatest risk of NTM disease with an estimated prevalence of 0.4%–14% [3–6]; the wide range in prevalence may reflect data gathered before 2007 when specific diagnostic criteria were published [7]. In contrast, the prevalence of NTM disease is lower in other graft types: heart transplant (0.24%–2.8%), renal transplant (0.16%–0.38%), and liver transplant (0.04%) [3, 4]. The time to diagnosis of NTM disease in SOT recipients is generally more than 12 months (median 21 months [4]) from transplant, though the amount of time varies by graft type. For example, the median times to NTM disease by graft type are as follows: liver transplant (10 months), lung transplant (15 months), renal transplant (24 months), and heart transplant (30 months) [3].
Pre-Transplant Risk Factors . | Post-Transplant Risk Factors . |
---|---|
Prior colonization or infection with NTM | Rejection |
Cystic fibrosis | Receipt of anti-thymocyte globulin |
Structural lung disease | Receipt of lymphocyte-specific antibody |
Primary or acquired immunodeficiency | Receipt of corticosteroids |
Lymphopenia | |
CMV mismatch | |
Frequent or recent hospitalization | |
African American race |
Pre-Transplant Risk Factors . | Post-Transplant Risk Factors . |
---|---|
Prior colonization or infection with NTM | Rejection |
Cystic fibrosis | Receipt of anti-thymocyte globulin |
Structural lung disease | Receipt of lymphocyte-specific antibody |
Primary or acquired immunodeficiency | Receipt of corticosteroids |
Lymphopenia | |
CMV mismatch | |
Frequent or recent hospitalization | |
African American race |
Pre-Transplant Risk Factors . | Post-Transplant Risk Factors . |
---|---|
Prior colonization or infection with NTM | Rejection |
Cystic fibrosis | Receipt of anti-thymocyte globulin |
Structural lung disease | Receipt of lymphocyte-specific antibody |
Primary or acquired immunodeficiency | Receipt of corticosteroids |
Lymphopenia | |
CMV mismatch | |
Frequent or recent hospitalization | |
African American race |
Pre-Transplant Risk Factors . | Post-Transplant Risk Factors . |
---|---|
Prior colonization or infection with NTM | Rejection |
Cystic fibrosis | Receipt of anti-thymocyte globulin |
Structural lung disease | Receipt of lymphocyte-specific antibody |
Primary or acquired immunodeficiency | Receipt of corticosteroids |
Lymphopenia | |
CMV mismatch | |
Frequent or recent hospitalization | |
African American race |
Lung transplant candidates are at particularly high risk as their underlying structural and functional lung disease is inherently favorable to the growth of NTM. For example, NTM colonization among people with cystic fibrosis (pwCF) poses a unique risk and was estimated at 9.6% in 2021, which is decreased from an estimate of 14% in 2019 [8]. While these are likely underestimates, even less is known about children as fewer than 30% of pwCF below 20 years of age have a sputum sample tested for mycobacterial growth [8]. In a comprehensive review of the literature between 2010 and 2019, the estimated prevalence of NTM infection (not colonization) in pwCF was 7.9% [9]. Infection with Mycobacterium avium complex accounted for 3.7% while M. abscessus was ~4.1% [9]. Mycobacterium abscessus is of particular concern, as pwCF with advanced lung disease and those who are colonized or infected with M. abscessus are at increased risk of death without transplant, and their risk of disease after lung transplant is significantly higher [10, 11]. Limited data are available for pediatric patients, though a single-center study of children with CF with chronic M. abscessus infection after lung transplant reported worse survival at 30 and 90 days after transplant [12]. Regardless, rates of NTM colonization are substantial and likely have meaningful impact on pwCF who require lung transplant.
HCT recipients reportedly have a 50–600 times greater incidence of NTM disease than the general public [13]. The estimated prevalence rate ranges from 0.04% to 10% with the highest rates among those receiving allogeneic HCT [13–15]. Risk factors are multifactorial and are influenced by the patient’s underlying condition and immune suppressive regimen (Table 2). Unlike SOT recipients, the onset of NTM disease in HCT occurs within the first 5 months, though catheter-related NTM infections typically occur sooner [13, 16].
Prior colonization or infection with NTM (especially among those with primary immune deficiency) |
Relapse of underlying malignancy prior to HCT |
Myeloablative conditioning regimen |
T cell depletion |
Delayed time to immune reconstitution |
Low CD4 count |
Structural lung disease |
Allogeneic HCT greater risk compared to autologous HCT |
Prior colonization or infection with NTM (especially among those with primary immune deficiency) |
Relapse of underlying malignancy prior to HCT |
Myeloablative conditioning regimen |
T cell depletion |
Delayed time to immune reconstitution |
Low CD4 count |
Structural lung disease |
Allogeneic HCT greater risk compared to autologous HCT |
Prior colonization or infection with NTM (especially among those with primary immune deficiency) |
Relapse of underlying malignancy prior to HCT |
Myeloablative conditioning regimen |
T cell depletion |
Delayed time to immune reconstitution |
Low CD4 count |
Structural lung disease |
Allogeneic HCT greater risk compared to autologous HCT |
Prior colonization or infection with NTM (especially among those with primary immune deficiency) |
Relapse of underlying malignancy prior to HCT |
Myeloablative conditioning regimen |
T cell depletion |
Delayed time to immune reconstitution |
Low CD4 count |
Structural lung disease |
Allogeneic HCT greater risk compared to autologous HCT |
MICROBIOLOGY
Clinically relevant NTM isolates can be divided into 2 groups based on their growth rates by conventional culture methods. Clinically relevant “rapidly growing” mycobacteria (defined as growth within 7 days in subculture) include M. abscessus, M. fortuitum, M. chelonae, and M. mucogenicum. The more common “slow growing” mycobacteria grow from media after >7 days and include M. avium complex (which includes over 12 different species and subspecies), M. kansasii, M. marinum, M. xenopi, M. szulgai, and M. haemophilum [17, 18]. Among SOT recipients, M. avium complex is the most common followed by M. chelonae, M. fortuitum, and M. kansasii [18]. The most common NTM species among HCT recipients include M. avium complex, M. abscessus, M. chelonae, and M. haemophilum [16].
CLINICAL MANIFESTATIONS
A range of manifestations of NTM disease is observed in both SOT and HCT recipients. Among SOT recipients, the most common manifestations of NTM disease include pulmonary infections (57.6%), skin/soft tissue infections (21%), and disseminated disease (16.5%) [4] with an equal distribution of rapid and slow-growing NTM. The clinical spectrum can vary by SOT graft types (Table 3). In contrast, catheter-related infections are the most common clinical manifestation (40%) in HCT recipients and are uncommon in SOT recipients [19, 20]. These are often caused by rapid-growing NTM within the first 3 months of HCT [2, 20, 21]. The second and third most common manifestations of NTM disease in HCT recipients are pulmonary (30%) and cutaneous (20%) disease, respectively [20, 22]. The most common NTM disease categories, clinical manifestations, commonly associated NTM species, and transplant type-specific features are summarized in Table 3.
Clinical Disease . | More Common NTM . | SOT . | HCT . | Typical Manifestations . |
---|---|---|---|---|
Pulmonary | M. avium complexa M. abscessus M. kansasii M. xenopi M. szulgai | Accounts for ~60% in SOT Most common in lung transplant Also common in heart and liver transplant Extrapulmonary involvement is common Concomitant fungal infection may occur | Accounts for 20%–30% in HCT Cavitary disease less common in HCT | Cough ± sputum Dyspnea Fever Weight loss Pleuritic chest pain Hemoptysis (less common) Radiographic features: Nodules Tree-in-bud opacities Bronchiectatic changes Parenchymal infiltrates Hilar adenopathy Cavitations or cavitary nodules Consolidation |
Cutaneous | M. chelonae M. fortuitum M. abscessus M. marinum | Accounts for 20% in SOT Site of trauma or surgery Most common manifestation among renal transplant recipients Often as component of disseminated disease | Site of trauma or surgery Multifocal cutaneous disease may occur | Painful, violaceous nodules Papules Plaques Abscess with purulent or serous fluid Folliculitis Panniculitis Sporotrichoid distribution Ulcers Typically on extremities Absence of systemic symptoms |
Musculoskeletal disease | M. avium complex M. ulcerans M. marinum M. kansasii M. hemophilum M. fortuitum M. chelonae | Occurs via direct inoculation or dissemination More common in heart and lung transplant recipients | Occurs via direct inoculation or dissemination | Muscle wasting Persistent pain and swelling of affected site(s) Draining sinus May be related to foreign device |
Disseminated | M. avium complexa M. marinum M. kansasii M. chelonae M. fortuitum M. abscessus | Accounts for 15% in SOT Can involve liver, spleen, bone marrow, lymph nodes, and graft organ Common in renal, liver, and heart | Associated with neutropenia Can involve liver, spleen, bone, peritoneum, or sinuses | Fever, weight loss Abdominal pain Fatigue |
Catheter related | M. chelonae M. fortuitum M. abscessus M. mucigenicum | Uncommon in SOT | Most common manifestation in HCT (40%) | May have localized erythema and/or pain at catheter exit site |
Clinical Disease . | More Common NTM . | SOT . | HCT . | Typical Manifestations . |
---|---|---|---|---|
Pulmonary | M. avium complexa M. abscessus M. kansasii M. xenopi M. szulgai | Accounts for ~60% in SOT Most common in lung transplant Also common in heart and liver transplant Extrapulmonary involvement is common Concomitant fungal infection may occur | Accounts for 20%–30% in HCT Cavitary disease less common in HCT | Cough ± sputum Dyspnea Fever Weight loss Pleuritic chest pain Hemoptysis (less common) Radiographic features: Nodules Tree-in-bud opacities Bronchiectatic changes Parenchymal infiltrates Hilar adenopathy Cavitations or cavitary nodules Consolidation |
Cutaneous | M. chelonae M. fortuitum M. abscessus M. marinum | Accounts for 20% in SOT Site of trauma or surgery Most common manifestation among renal transplant recipients Often as component of disseminated disease | Site of trauma or surgery Multifocal cutaneous disease may occur | Painful, violaceous nodules Papules Plaques Abscess with purulent or serous fluid Folliculitis Panniculitis Sporotrichoid distribution Ulcers Typically on extremities Absence of systemic symptoms |
Musculoskeletal disease | M. avium complex M. ulcerans M. marinum M. kansasii M. hemophilum M. fortuitum M. chelonae | Occurs via direct inoculation or dissemination More common in heart and lung transplant recipients | Occurs via direct inoculation or dissemination | Muscle wasting Persistent pain and swelling of affected site(s) Draining sinus May be related to foreign device |
Disseminated | M. avium complexa M. marinum M. kansasii M. chelonae M. fortuitum M. abscessus | Accounts for 15% in SOT Can involve liver, spleen, bone marrow, lymph nodes, and graft organ Common in renal, liver, and heart | Associated with neutropenia Can involve liver, spleen, bone, peritoneum, or sinuses | Fever, weight loss Abdominal pain Fatigue |
Catheter related | M. chelonae M. fortuitum M. abscessus M. mucigenicum | Uncommon in SOT | Most common manifestation in HCT (40%) | May have localized erythema and/or pain at catheter exit site |
aDenotes most common pathogen in relevant clinical category.
Clinical Disease . | More Common NTM . | SOT . | HCT . | Typical Manifestations . |
---|---|---|---|---|
Pulmonary | M. avium complexa M. abscessus M. kansasii M. xenopi M. szulgai | Accounts for ~60% in SOT Most common in lung transplant Also common in heart and liver transplant Extrapulmonary involvement is common Concomitant fungal infection may occur | Accounts for 20%–30% in HCT Cavitary disease less common in HCT | Cough ± sputum Dyspnea Fever Weight loss Pleuritic chest pain Hemoptysis (less common) Radiographic features: Nodules Tree-in-bud opacities Bronchiectatic changes Parenchymal infiltrates Hilar adenopathy Cavitations or cavitary nodules Consolidation |
Cutaneous | M. chelonae M. fortuitum M. abscessus M. marinum | Accounts for 20% in SOT Site of trauma or surgery Most common manifestation among renal transplant recipients Often as component of disseminated disease | Site of trauma or surgery Multifocal cutaneous disease may occur | Painful, violaceous nodules Papules Plaques Abscess with purulent or serous fluid Folliculitis Panniculitis Sporotrichoid distribution Ulcers Typically on extremities Absence of systemic symptoms |
Musculoskeletal disease | M. avium complex M. ulcerans M. marinum M. kansasii M. hemophilum M. fortuitum M. chelonae | Occurs via direct inoculation or dissemination More common in heart and lung transplant recipients | Occurs via direct inoculation or dissemination | Muscle wasting Persistent pain and swelling of affected site(s) Draining sinus May be related to foreign device |
Disseminated | M. avium complexa M. marinum M. kansasii M. chelonae M. fortuitum M. abscessus | Accounts for 15% in SOT Can involve liver, spleen, bone marrow, lymph nodes, and graft organ Common in renal, liver, and heart | Associated with neutropenia Can involve liver, spleen, bone, peritoneum, or sinuses | Fever, weight loss Abdominal pain Fatigue |
Catheter related | M. chelonae M. fortuitum M. abscessus M. mucigenicum | Uncommon in SOT | Most common manifestation in HCT (40%) | May have localized erythema and/or pain at catheter exit site |
Clinical Disease . | More Common NTM . | SOT . | HCT . | Typical Manifestations . |
---|---|---|---|---|
Pulmonary | M. avium complexa M. abscessus M. kansasii M. xenopi M. szulgai | Accounts for ~60% in SOT Most common in lung transplant Also common in heart and liver transplant Extrapulmonary involvement is common Concomitant fungal infection may occur | Accounts for 20%–30% in HCT Cavitary disease less common in HCT | Cough ± sputum Dyspnea Fever Weight loss Pleuritic chest pain Hemoptysis (less common) Radiographic features: Nodules Tree-in-bud opacities Bronchiectatic changes Parenchymal infiltrates Hilar adenopathy Cavitations or cavitary nodules Consolidation |
Cutaneous | M. chelonae M. fortuitum M. abscessus M. marinum | Accounts for 20% in SOT Site of trauma or surgery Most common manifestation among renal transplant recipients Often as component of disseminated disease | Site of trauma or surgery Multifocal cutaneous disease may occur | Painful, violaceous nodules Papules Plaques Abscess with purulent or serous fluid Folliculitis Panniculitis Sporotrichoid distribution Ulcers Typically on extremities Absence of systemic symptoms |
Musculoskeletal disease | M. avium complex M. ulcerans M. marinum M. kansasii M. hemophilum M. fortuitum M. chelonae | Occurs via direct inoculation or dissemination More common in heart and lung transplant recipients | Occurs via direct inoculation or dissemination | Muscle wasting Persistent pain and swelling of affected site(s) Draining sinus May be related to foreign device |
Disseminated | M. avium complexa M. marinum M. kansasii M. chelonae M. fortuitum M. abscessus | Accounts for 15% in SOT Can involve liver, spleen, bone marrow, lymph nodes, and graft organ Common in renal, liver, and heart | Associated with neutropenia Can involve liver, spleen, bone, peritoneum, or sinuses | Fever, weight loss Abdominal pain Fatigue |
Catheter related | M. chelonae M. fortuitum M. abscessus M. mucigenicum | Uncommon in SOT | Most common manifestation in HCT (40%) | May have localized erythema and/or pain at catheter exit site |
aDenotes most common pathogen in relevant clinical category.
Pulmonary Disease
As environmental NTM are ubiquitous, NTM colonization in lung transplant recipients is common and should be distinguished from disease as transplant centers have reported that only 2.3%–14% of lung transplant recipients colonized with NTM meet criteria for pulmonary disease [23, 24]. Criteria for diagnosis of NTM pulmonary disease include clinical (pulmonary or systemic symptoms), radiologic (nodular or cavitary disease on chest radiograph or bronchiectasis and multiple nodules on high-resolution CT), and microbiologic features (NTM positive culture from 2 separate sputum samples or positive culture from ≥1 bronchial lavage or wash, or histopathologic features of mycobacterial disease from lung biopsy and confirmed by culture of sputum or bronchial wash) [25]. While these criteria have not been validated in SOT or HCT recipients, most reports have used the same or similar criteria to discern colonization from pulmonary disease [4, 10, 16, 20, 26]. Systemic or pulmonary symptoms are often chronic and may include worsening cough with or without sputum production and other nonspecific symptoms and radiographic features (Table 3) [4, 19, 27, 28].
Cutaneous/Musculoskeletal Disease
Cutaneous lesions can vary but can be minimally painful, nodular, plaque-like, ulcerative, and erythematous to violaceous. Occurring as single or clusters of skin lesions, they are often slow-growing without systemic symptoms. Lymphangitis with characteristic sporotrichoid distribution may be seen as well as tenosynovitis and osteoarticular disease. Disease can be localized via direct inoculation (eg, trauma or infected hardware) or diffuse as a sign of disseminated NTM disease. Diagnosis often requires histopathologic confirmation and culture with evaluation for Nocardia and fungal organisms [19]. Skin lesions and hardware involvement are most associated with M. fortuitum, M. abscessus, and M. chelonae. Catheter-related infections can have skin manifestations along the catheter tunnel or exit site [2, 13].
Disseminated Disease
Definitive diagnosis of disseminated disease requires histopathological confirmation of sterile site involvement, mycobacterial culture from blood, and other affected sites which often requires imaging to assess extent of involvement. In HCT recipients, it can be the result of catheter-related infections if the catheter is not removed promptly [13]. Disseminated disease can occur in all SOT recipients, though it is most common in renal transplant recipients [19], accounting for 40% of cases in 1 series, with M. chelonae being the most common NTM species [29]. Unfortunately, mortality in renal transplant recipients is as high as 20% (both directly from NTM and other sequelae), and 30% of cases lost graft function [29]. Pulmonary disease is present in nearly half of cases, with involvement of other sites that include the GI tract, endovascular sites, skin, lymph node, bone marrow, and other organs (Table 3) [4, 19].
DIAGNOSIS
Diagnostic work-up of NTM should be driven by clinical suspicion, histopathological confirmation, and appropriate culture results that often require careful interpretation as these organisms exist in the environment and could be considered contaminants. Tissues or sterile fluids are preferred over swabs, although sometimes cultures from non-sterile sites (eg, sputum) are the only available specimen. Expertise in appropriate mycobacterial lab protocols is essential in facilitating decontamination of non-sterile samples, optimal growth in selective media, temperature conditions (eg, 36.1°C for slow growers and 28°C for rapid growers), and incubation duration. AFB smear and culture are considered the gold standard in identifying NTM. Communication to the mycobacterial lab should be conducted when certain NTM types are suspected to ensure optimal growth conditions are performed. For example, when M. haemophilum is suspected, it requires special iron-supplemented media and growth at lower temperatures (28–30°C) [17]. Given the long incubation periods required for NTM growth, rapid methods of identification have been developed and are reviewed in Table 4. Laboratory techniques and workflows likely vary by institution based on laboratory capacity, expertise, and cost. Importantly, these methods do not replace conventional culture methods as susceptibility testing for clinically relevant antibiotics must be performed using broth microdilution that requires live culture [30].
Assay Technique . | Key Aspect(s) . | Disadvantage . | Advantage . |
---|---|---|---|
Decontamination | Critical for all non-sterile sites to reduce contamination and increase yield of mycobacterial recovery | Reduces viability of NTM | |
N-acetyl-l-cysteine, NaOH, oxalic acid (NALC-NaOH-OxA) | Reduces viability of NTM Optimal recovery when used with the MOD9 liquid media | ||
Chlorhexidine | Advantageous in cystic fibrosis sputum samples as Pseudomonas is often resistant to (NALC-NaOH-OxA) | ||
Smear (eg, Kinyon, Ziehl-Neelsen) | Gold standard with culture Indicates presence of Mycobacterial spp. Bleach treatment and concentrating sample may improve sensitivity | Limited sensitivity Does not provide species identification | Rapid detection of Mycobacterium spp. |
Culture | Gold standard with smear Bodily fluids preferred over swabs Both liquid and solid media should be planted | Long duration of time required for growth and identification | More sensitive than other assays |
Liquid culture | Typically set up in commercial continuous detection systems | Higher risk of bacterial contamination Can take up to 6 weeks for results | Shorter time to detection compared to solid media |
Solid culture(egg vs agar-based methods) | Provides pure growth from isolate to facilitate species identification and susceptibility testing | Slower time to detection Takes up to 8 weeks | Provides semi-quantitative measures Selective agar-based media available for rapid-growing NTM |
Conventional phenotypic identification | Identification based on growth rate, colony morphology, pigment, and biochemical testing | Requires solid media growth Takes weeks of incubation May not distinguish all species of NTM Not reliable and no longer recommended | |
Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) | Method of rapid identification of NTM Requires pure growth of isolate on solid media | Identifies most, but not all, NTM species Identification may be limited by spectra database Unable to distinguish closely related NTM | Simpler than nucleic acid amplification techniques Low cost Rapid turnover |
Nucleic Acid Hybridization Probe | Rapid identification of select NTM | Limited NTM isolates identified Discontinued by manufacturers Limited sensitivity as no amplification used | Rapid, cheap Easy to use |
Nucleic Acid Amplification Techniques (NAAT) | Faster than conventional identification methods | Limited sensitivity Limited spectrum of resistant testing available | May be used for rapid ID and resistance testing |
Line Probe Assays | Reverse hybridization assay involving amplification of different mycobacterial targets and subsequent identification of specific amplicon | Labor intensive Not FDA approved Limited NTM identified | Can provide rapid identification Can identify resistant markers Labor intensive |
PCR-DNA based Sequencing | Whole genome sequencing or Sanger sequencing of conserved genes (eg, 16s rRNA, and hsp65) | Dependent on sequence database High cost and complexity (usually reference lab) Limited sensitivity depending on sample type Unable to detect phenotypic resistance Variable performance | Faster than standard culture methods New species can be identified Can detect resistance genotypes (eg, rpoB) |
Assay Technique . | Key Aspect(s) . | Disadvantage . | Advantage . |
---|---|---|---|
Decontamination | Critical for all non-sterile sites to reduce contamination and increase yield of mycobacterial recovery | Reduces viability of NTM | |
N-acetyl-l-cysteine, NaOH, oxalic acid (NALC-NaOH-OxA) | Reduces viability of NTM Optimal recovery when used with the MOD9 liquid media | ||
Chlorhexidine | Advantageous in cystic fibrosis sputum samples as Pseudomonas is often resistant to (NALC-NaOH-OxA) | ||
Smear (eg, Kinyon, Ziehl-Neelsen) | Gold standard with culture Indicates presence of Mycobacterial spp. Bleach treatment and concentrating sample may improve sensitivity | Limited sensitivity Does not provide species identification | Rapid detection of Mycobacterium spp. |
Culture | Gold standard with smear Bodily fluids preferred over swabs Both liquid and solid media should be planted | Long duration of time required for growth and identification | More sensitive than other assays |
Liquid culture | Typically set up in commercial continuous detection systems | Higher risk of bacterial contamination Can take up to 6 weeks for results | Shorter time to detection compared to solid media |
Solid culture(egg vs agar-based methods) | Provides pure growth from isolate to facilitate species identification and susceptibility testing | Slower time to detection Takes up to 8 weeks | Provides semi-quantitative measures Selective agar-based media available for rapid-growing NTM |
Conventional phenotypic identification | Identification based on growth rate, colony morphology, pigment, and biochemical testing | Requires solid media growth Takes weeks of incubation May not distinguish all species of NTM Not reliable and no longer recommended | |
Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) | Method of rapid identification of NTM Requires pure growth of isolate on solid media | Identifies most, but not all, NTM species Identification may be limited by spectra database Unable to distinguish closely related NTM | Simpler than nucleic acid amplification techniques Low cost Rapid turnover |
Nucleic Acid Hybridization Probe | Rapid identification of select NTM | Limited NTM isolates identified Discontinued by manufacturers Limited sensitivity as no amplification used | Rapid, cheap Easy to use |
Nucleic Acid Amplification Techniques (NAAT) | Faster than conventional identification methods | Limited sensitivity Limited spectrum of resistant testing available | May be used for rapid ID and resistance testing |
Line Probe Assays | Reverse hybridization assay involving amplification of different mycobacterial targets and subsequent identification of specific amplicon | Labor intensive Not FDA approved Limited NTM identified | Can provide rapid identification Can identify resistant markers Labor intensive |
PCR-DNA based Sequencing | Whole genome sequencing or Sanger sequencing of conserved genes (eg, 16s rRNA, and hsp65) | Dependent on sequence database High cost and complexity (usually reference lab) Limited sensitivity depending on sample type Unable to detect phenotypic resistance Variable performance | Faster than standard culture methods New species can be identified Can detect resistance genotypes (eg, rpoB) |
Assay Technique . | Key Aspect(s) . | Disadvantage . | Advantage . |
---|---|---|---|
Decontamination | Critical for all non-sterile sites to reduce contamination and increase yield of mycobacterial recovery | Reduces viability of NTM | |
N-acetyl-l-cysteine, NaOH, oxalic acid (NALC-NaOH-OxA) | Reduces viability of NTM Optimal recovery when used with the MOD9 liquid media | ||
Chlorhexidine | Advantageous in cystic fibrosis sputum samples as Pseudomonas is often resistant to (NALC-NaOH-OxA) | ||
Smear (eg, Kinyon, Ziehl-Neelsen) | Gold standard with culture Indicates presence of Mycobacterial spp. Bleach treatment and concentrating sample may improve sensitivity | Limited sensitivity Does not provide species identification | Rapid detection of Mycobacterium spp. |
Culture | Gold standard with smear Bodily fluids preferred over swabs Both liquid and solid media should be planted | Long duration of time required for growth and identification | More sensitive than other assays |
Liquid culture | Typically set up in commercial continuous detection systems | Higher risk of bacterial contamination Can take up to 6 weeks for results | Shorter time to detection compared to solid media |
Solid culture(egg vs agar-based methods) | Provides pure growth from isolate to facilitate species identification and susceptibility testing | Slower time to detection Takes up to 8 weeks | Provides semi-quantitative measures Selective agar-based media available for rapid-growing NTM |
Conventional phenotypic identification | Identification based on growth rate, colony morphology, pigment, and biochemical testing | Requires solid media growth Takes weeks of incubation May not distinguish all species of NTM Not reliable and no longer recommended | |
Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) | Method of rapid identification of NTM Requires pure growth of isolate on solid media | Identifies most, but not all, NTM species Identification may be limited by spectra database Unable to distinguish closely related NTM | Simpler than nucleic acid amplification techniques Low cost Rapid turnover |
Nucleic Acid Hybridization Probe | Rapid identification of select NTM | Limited NTM isolates identified Discontinued by manufacturers Limited sensitivity as no amplification used | Rapid, cheap Easy to use |
Nucleic Acid Amplification Techniques (NAAT) | Faster than conventional identification methods | Limited sensitivity Limited spectrum of resistant testing available | May be used for rapid ID and resistance testing |
Line Probe Assays | Reverse hybridization assay involving amplification of different mycobacterial targets and subsequent identification of specific amplicon | Labor intensive Not FDA approved Limited NTM identified | Can provide rapid identification Can identify resistant markers Labor intensive |
PCR-DNA based Sequencing | Whole genome sequencing or Sanger sequencing of conserved genes (eg, 16s rRNA, and hsp65) | Dependent on sequence database High cost and complexity (usually reference lab) Limited sensitivity depending on sample type Unable to detect phenotypic resistance Variable performance | Faster than standard culture methods New species can be identified Can detect resistance genotypes (eg, rpoB) |
Assay Technique . | Key Aspect(s) . | Disadvantage . | Advantage . |
---|---|---|---|
Decontamination | Critical for all non-sterile sites to reduce contamination and increase yield of mycobacterial recovery | Reduces viability of NTM | |
N-acetyl-l-cysteine, NaOH, oxalic acid (NALC-NaOH-OxA) | Reduces viability of NTM Optimal recovery when used with the MOD9 liquid media | ||
Chlorhexidine | Advantageous in cystic fibrosis sputum samples as Pseudomonas is often resistant to (NALC-NaOH-OxA) | ||
Smear (eg, Kinyon, Ziehl-Neelsen) | Gold standard with culture Indicates presence of Mycobacterial spp. Bleach treatment and concentrating sample may improve sensitivity | Limited sensitivity Does not provide species identification | Rapid detection of Mycobacterium spp. |
Culture | Gold standard with smear Bodily fluids preferred over swabs Both liquid and solid media should be planted | Long duration of time required for growth and identification | More sensitive than other assays |
Liquid culture | Typically set up in commercial continuous detection systems | Higher risk of bacterial contamination Can take up to 6 weeks for results | Shorter time to detection compared to solid media |
Solid culture(egg vs agar-based methods) | Provides pure growth from isolate to facilitate species identification and susceptibility testing | Slower time to detection Takes up to 8 weeks | Provides semi-quantitative measures Selective agar-based media available for rapid-growing NTM |
Conventional phenotypic identification | Identification based on growth rate, colony morphology, pigment, and biochemical testing | Requires solid media growth Takes weeks of incubation May not distinguish all species of NTM Not reliable and no longer recommended | |
Matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) | Method of rapid identification of NTM Requires pure growth of isolate on solid media | Identifies most, but not all, NTM species Identification may be limited by spectra database Unable to distinguish closely related NTM | Simpler than nucleic acid amplification techniques Low cost Rapid turnover |
Nucleic Acid Hybridization Probe | Rapid identification of select NTM | Limited NTM isolates identified Discontinued by manufacturers Limited sensitivity as no amplification used | Rapid, cheap Easy to use |
Nucleic Acid Amplification Techniques (NAAT) | Faster than conventional identification methods | Limited sensitivity Limited spectrum of resistant testing available | May be used for rapid ID and resistance testing |
Line Probe Assays | Reverse hybridization assay involving amplification of different mycobacterial targets and subsequent identification of specific amplicon | Labor intensive Not FDA approved Limited NTM identified | Can provide rapid identification Can identify resistant markers Labor intensive |
PCR-DNA based Sequencing | Whole genome sequencing or Sanger sequencing of conserved genes (eg, 16s rRNA, and hsp65) | Dependent on sequence database High cost and complexity (usually reference lab) Limited sensitivity depending on sample type Unable to detect phenotypic resistance Variable performance | Faster than standard culture methods New species can be identified Can detect resistance genotypes (eg, rpoB) |
Importantly, once the diagnosis of NTM disease is confirmed, a comprehensive assessment of other potential sites of disseminated disease (eg, brain, chest, abdomen, and pelvis) and mycobacterial blood cultures should be performed as this can have important implications for monitoring, treatment, and outcome.
TREATMENT
Susceptibility testing of NTM clinical isolates is essential to planning definitive therapy as multiple antimycobacterial agents are required for treatment and prevention of resistance. In vitro susceptibility results do not always correlate with clinical outcomes and are specific to the NTM species. The optimal duration of treatment is not known and is dependent on the NTM species, microbiologic, clinical, and radiologic response to treatment. In general, the treatment course typically lasts several months after resolution of symptoms to reduce the risk of relapse given the prolonged nature of these infections. When possible, reduction in immune suppression at the initiation of therapy is recommended. Treatment is further complicated by the side effects of antimycobacterial agents, inherent multi-drug resistance of some species, and drug–drug interactions with the patient’s immune-suppressing medications (Table 5) [1, 16]. Coordination with a therapeutic drug monitoring team is essential to maximize drug effectiveness, mitigate drug toxicities, and identify alternative medications when necessary [31]. Most of the literature regarding treatment is based on the most common species (ie, M. avium complex, M. kansasii, and M. abscessus) which is important to consider when treating extrapulmonary disease. Consultation with an NTM expert is a critical part of treatment as the optimal regimen and duration of treatment is made on a case-by-case basis.
Drug . | Agents Commonly Used in SOT and HCT Recipients . |
---|---|
Rifamycin | ↓ calcineurin inhibitor ↓ cyclosporin ↓ mycophenolate ↑ cyclophosphamide Loss of sirolimus effectiveness ↓ steroid effect Possible ↓ vincristine ↓ ruxolitinib ↓ dasatinib ↓ ibrutinib ↓ triazole antifungals ↓ echinocandins |
Macrolide (Greater risk of interactions with clarithromycin than azithromycin) | ↑ calcineurin inhibitor ↑ sirolimus ↑ cyclosporin ↑ triazole antifungals ↑ risk of steroid adverse events ↑ risk of vincristine toxicity |
Aminoglycoside | Additive renal toxicity with calcineurin inhibitor |
Fluoroquinolones | Calcineurin inhibitor—↑ risk of QTc prolongation Possible ↓ mycophenolate Triazole antifungals—↑ risk of QTc prolongation |
Imipenem | Additive neurotoxicity with cyclosporin |
Isoniazid | ↑ voriconazole Additive hepatotoxicity with acetaminophen |
Drug . | Agents Commonly Used in SOT and HCT Recipients . |
---|---|
Rifamycin | ↓ calcineurin inhibitor ↓ cyclosporin ↓ mycophenolate ↑ cyclophosphamide Loss of sirolimus effectiveness ↓ steroid effect Possible ↓ vincristine ↓ ruxolitinib ↓ dasatinib ↓ ibrutinib ↓ triazole antifungals ↓ echinocandins |
Macrolide (Greater risk of interactions with clarithromycin than azithromycin) | ↑ calcineurin inhibitor ↑ sirolimus ↑ cyclosporin ↑ triazole antifungals ↑ risk of steroid adverse events ↑ risk of vincristine toxicity |
Aminoglycoside | Additive renal toxicity with calcineurin inhibitor |
Fluoroquinolones | Calcineurin inhibitor—↑ risk of QTc prolongation Possible ↓ mycophenolate Triazole antifungals—↑ risk of QTc prolongation |
Imipenem | Additive neurotoxicity with cyclosporin |
Isoniazid | ↑ voriconazole Additive hepatotoxicity with acetaminophen |
Drug . | Agents Commonly Used in SOT and HCT Recipients . |
---|---|
Rifamycin | ↓ calcineurin inhibitor ↓ cyclosporin ↓ mycophenolate ↑ cyclophosphamide Loss of sirolimus effectiveness ↓ steroid effect Possible ↓ vincristine ↓ ruxolitinib ↓ dasatinib ↓ ibrutinib ↓ triazole antifungals ↓ echinocandins |
Macrolide (Greater risk of interactions with clarithromycin than azithromycin) | ↑ calcineurin inhibitor ↑ sirolimus ↑ cyclosporin ↑ triazole antifungals ↑ risk of steroid adverse events ↑ risk of vincristine toxicity |
Aminoglycoside | Additive renal toxicity with calcineurin inhibitor |
Fluoroquinolones | Calcineurin inhibitor—↑ risk of QTc prolongation Possible ↓ mycophenolate Triazole antifungals—↑ risk of QTc prolongation |
Imipenem | Additive neurotoxicity with cyclosporin |
Isoniazid | ↑ voriconazole Additive hepatotoxicity with acetaminophen |
Drug . | Agents Commonly Used in SOT and HCT Recipients . |
---|---|
Rifamycin | ↓ calcineurin inhibitor ↓ cyclosporin ↓ mycophenolate ↑ cyclophosphamide Loss of sirolimus effectiveness ↓ steroid effect Possible ↓ vincristine ↓ ruxolitinib ↓ dasatinib ↓ ibrutinib ↓ triazole antifungals ↓ echinocandins |
Macrolide (Greater risk of interactions with clarithromycin than azithromycin) | ↑ calcineurin inhibitor ↑ sirolimus ↑ cyclosporin ↑ triazole antifungals ↑ risk of steroid adverse events ↑ risk of vincristine toxicity |
Aminoglycoside | Additive renal toxicity with calcineurin inhibitor |
Fluoroquinolones | Calcineurin inhibitor—↑ risk of QTc prolongation Possible ↓ mycophenolate Triazole antifungals—↑ risk of QTc prolongation |
Imipenem | Additive neurotoxicity with cyclosporin |
Isoniazid | ↑ voriconazole Additive hepatotoxicity with acetaminophen |
Given the lack of evidence-based treatment regimens and complications in treatment and outcome, shared decision-making with other care teams, the patient, and patient’s family are often necessary to weigh the risks and benefits of long-term treatment. Pediatric dosing and expected toxicities of common antimycobacterial agents is outlined in Table 6. For SOT recipients, treatment should continue until there is a period of immune stability (ie, no rejection). For HCT recipients, antimycobacterial therapy should continue through transplant and reconstitution of cell-mediated immunity. Surgical intervention should be considered as an adjunctive therapy for cases in which diseased tissue can be debrided. For NTM catheter-related bloodstream infections, the infected central catheter should be removed to prevent relapse and/or dissemination of disease [13, 32].
Drug . | Pediatric Dose . | Common Toxicities . |
---|---|---|
Azithromycin | 10–12 mg/kg PO or IV daily, max dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Clarithromycin | 15–30 mg/kg/day PO divided Q12, max single dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Ethambutol | Infants and Children: 15–25 mg/kg PO daily, max dose 2500 mg Adolescents: 15 mg/kg PO daily, max dose 2500 mg | Impaired visual acuity or color vision Peripheral neuropathy |
Rifabutin | 10–20 mg/kg PO daily, max dose 300 mg | Hepatotoxicity Leukopenia Orange-colored secretions |
Rifampin | 10–20 mg/kg PO daily, max dose 600 mg | Hepatoxicity Leukopenia Orange-colored secretions |
Ciprofloxacin | 20 mg/kg/day IV divided Q12, max single dose 400 mg; 20–30 mg/kg/day PO divided Q12, max single dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Levofloxacin | Infants and Children <5 years: 20 mg/kg/day IV or PO divided Q12, max single dose 750 mg Children ≥5 years: 10 mg/kg IV or PO daily, max dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Moxifloxacin | 10 mg/kg IV or PO daily, max dose 400 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Amikacin | Infants and Children: 15–30 mg/kg/day IV daily or divided Q12, max single dose 1500 mg Adolescents: 10–15 mg/kg IV dailya, max dose 1500 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Streptomycin | Infants and Children: 20–40 mg/kg IV or IM daily, max dose 1000 mg Adolescents: 15 mg/kg IV daily, max dose 1000 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Tobramycin | 5 mg/kg IV daily or 3×/week | Nephrotoxicity Ototoxicity Vestibular toxicity |
Linezolid | 20–24 mg/kg/day IV or PO divided Q12, max single dose 600 mg | Myelosuppression Peripheral neuropathy |
Isoniazid | 10–15 mg/kg PO or IM daily, max dose 300 mgb | Hepatotoxicity |
Doxycycline | 4.4 mg/kg/day IV or PO divided Q12, max single dose 100 mg | Photosensitivity Pill esophagitis (if PO) |
Minocycline | ≥8 years: 4 mg/kg IV or PO once (max dose 200 mg), followed by 4 mg/kg/day IV or PO divided Q12 (max single dose 100 mg) | Photosensitivity |
Tigecycline | 8–11 years: 2.4 mg/kg/day IV divided Q12, max single dose 50 mg 12–18 years: 100 mg/day IV divided Q12 | GI intolerance |
Cefoxitin | 160 mg/kg/day IV divided Q6, max single dose 3000 mg | |
Imipenem | 30–40 mg/kg/day IV divided Q12, max single dose 1000 mg | Myelosuppression Hepatotoxicity |
Trimethoprim/sulfamethoxazole | 15 mg/kg/day IV by TMP component, divided Q8, max single dose 320 mg by TMP component | Myelosuppression Rash |
Drug . | Pediatric Dose . | Common Toxicities . |
---|---|---|
Azithromycin | 10–12 mg/kg PO or IV daily, max dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Clarithromycin | 15–30 mg/kg/day PO divided Q12, max single dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Ethambutol | Infants and Children: 15–25 mg/kg PO daily, max dose 2500 mg Adolescents: 15 mg/kg PO daily, max dose 2500 mg | Impaired visual acuity or color vision Peripheral neuropathy |
Rifabutin | 10–20 mg/kg PO daily, max dose 300 mg | Hepatotoxicity Leukopenia Orange-colored secretions |
Rifampin | 10–20 mg/kg PO daily, max dose 600 mg | Hepatoxicity Leukopenia Orange-colored secretions |
Ciprofloxacin | 20 mg/kg/day IV divided Q12, max single dose 400 mg; 20–30 mg/kg/day PO divided Q12, max single dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Levofloxacin | Infants and Children <5 years: 20 mg/kg/day IV or PO divided Q12, max single dose 750 mg Children ≥5 years: 10 mg/kg IV or PO daily, max dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Moxifloxacin | 10 mg/kg IV or PO daily, max dose 400 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Amikacin | Infants and Children: 15–30 mg/kg/day IV daily or divided Q12, max single dose 1500 mg Adolescents: 10–15 mg/kg IV dailya, max dose 1500 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Streptomycin | Infants and Children: 20–40 mg/kg IV or IM daily, max dose 1000 mg Adolescents: 15 mg/kg IV daily, max dose 1000 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Tobramycin | 5 mg/kg IV daily or 3×/week | Nephrotoxicity Ototoxicity Vestibular toxicity |
Linezolid | 20–24 mg/kg/day IV or PO divided Q12, max single dose 600 mg | Myelosuppression Peripheral neuropathy |
Isoniazid | 10–15 mg/kg PO or IM daily, max dose 300 mgb | Hepatotoxicity |
Doxycycline | 4.4 mg/kg/day IV or PO divided Q12, max single dose 100 mg | Photosensitivity Pill esophagitis (if PO) |
Minocycline | ≥8 years: 4 mg/kg IV or PO once (max dose 200 mg), followed by 4 mg/kg/day IV or PO divided Q12 (max single dose 100 mg) | Photosensitivity |
Tigecycline | 8–11 years: 2.4 mg/kg/day IV divided Q12, max single dose 50 mg 12–18 years: 100 mg/day IV divided Q12 | GI intolerance |
Cefoxitin | 160 mg/kg/day IV divided Q6, max single dose 3000 mg | |
Imipenem | 30–40 mg/kg/day IV divided Q12, max single dose 1000 mg | Myelosuppression Hepatotoxicity |
Trimethoprim/sulfamethoxazole | 15 mg/kg/day IV by TMP component, divided Q8, max single dose 320 mg by TMP component | Myelosuppression Rash |
Abbreviations: IM, intramuscular; IV, intravenous; PO, by mouth; Q6, every 6 h dosing; Q8, every 8 h dosing; Q12, every 12 h dosing.
bConsider pyridoxine 1–2 mg/kg/day for patients who are malnourished, patients on milk or meat-deficient diets, breastfeeding infants, and patients predisposed to neuritis.
Drug . | Pediatric Dose . | Common Toxicities . |
---|---|---|
Azithromycin | 10–12 mg/kg PO or IV daily, max dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Clarithromycin | 15–30 mg/kg/day PO divided Q12, max single dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Ethambutol | Infants and Children: 15–25 mg/kg PO daily, max dose 2500 mg Adolescents: 15 mg/kg PO daily, max dose 2500 mg | Impaired visual acuity or color vision Peripheral neuropathy |
Rifabutin | 10–20 mg/kg PO daily, max dose 300 mg | Hepatotoxicity Leukopenia Orange-colored secretions |
Rifampin | 10–20 mg/kg PO daily, max dose 600 mg | Hepatoxicity Leukopenia Orange-colored secretions |
Ciprofloxacin | 20 mg/kg/day IV divided Q12, max single dose 400 mg; 20–30 mg/kg/day PO divided Q12, max single dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Levofloxacin | Infants and Children <5 years: 20 mg/kg/day IV or PO divided Q12, max single dose 750 mg Children ≥5 years: 10 mg/kg IV or PO daily, max dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Moxifloxacin | 10 mg/kg IV or PO daily, max dose 400 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Amikacin | Infants and Children: 15–30 mg/kg/day IV daily or divided Q12, max single dose 1500 mg Adolescents: 10–15 mg/kg IV dailya, max dose 1500 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Streptomycin | Infants and Children: 20–40 mg/kg IV or IM daily, max dose 1000 mg Adolescents: 15 mg/kg IV daily, max dose 1000 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Tobramycin | 5 mg/kg IV daily or 3×/week | Nephrotoxicity Ototoxicity Vestibular toxicity |
Linezolid | 20–24 mg/kg/day IV or PO divided Q12, max single dose 600 mg | Myelosuppression Peripheral neuropathy |
Isoniazid | 10–15 mg/kg PO or IM daily, max dose 300 mgb | Hepatotoxicity |
Doxycycline | 4.4 mg/kg/day IV or PO divided Q12, max single dose 100 mg | Photosensitivity Pill esophagitis (if PO) |
Minocycline | ≥8 years: 4 mg/kg IV or PO once (max dose 200 mg), followed by 4 mg/kg/day IV or PO divided Q12 (max single dose 100 mg) | Photosensitivity |
Tigecycline | 8–11 years: 2.4 mg/kg/day IV divided Q12, max single dose 50 mg 12–18 years: 100 mg/day IV divided Q12 | GI intolerance |
Cefoxitin | 160 mg/kg/day IV divided Q6, max single dose 3000 mg | |
Imipenem | 30–40 mg/kg/day IV divided Q12, max single dose 1000 mg | Myelosuppression Hepatotoxicity |
Trimethoprim/sulfamethoxazole | 15 mg/kg/day IV by TMP component, divided Q8, max single dose 320 mg by TMP component | Myelosuppression Rash |
Drug . | Pediatric Dose . | Common Toxicities . |
---|---|---|
Azithromycin | 10–12 mg/kg PO or IV daily, max dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Clarithromycin | 15–30 mg/kg/day PO divided Q12, max single dose 500 mg | Hepatotoxicity Ototoxicity (prolonged use) QTc prolongation |
Ethambutol | Infants and Children: 15–25 mg/kg PO daily, max dose 2500 mg Adolescents: 15 mg/kg PO daily, max dose 2500 mg | Impaired visual acuity or color vision Peripheral neuropathy |
Rifabutin | 10–20 mg/kg PO daily, max dose 300 mg | Hepatotoxicity Leukopenia Orange-colored secretions |
Rifampin | 10–20 mg/kg PO daily, max dose 600 mg | Hepatoxicity Leukopenia Orange-colored secretions |
Ciprofloxacin | 20 mg/kg/day IV divided Q12, max single dose 400 mg; 20–30 mg/kg/day PO divided Q12, max single dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Levofloxacin | Infants and Children <5 years: 20 mg/kg/day IV or PO divided Q12, max single dose 750 mg Children ≥5 years: 10 mg/kg IV or PO daily, max dose 750 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Moxifloxacin | 10 mg/kg IV or PO daily, max dose 400 mg | QTc prolongation Possible tendinopathy Possible aneurysm formation |
Amikacin | Infants and Children: 15–30 mg/kg/day IV daily or divided Q12, max single dose 1500 mg Adolescents: 10–15 mg/kg IV dailya, max dose 1500 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Streptomycin | Infants and Children: 20–40 mg/kg IV or IM daily, max dose 1000 mg Adolescents: 15 mg/kg IV daily, max dose 1000 mg | Nephrotoxicity Ototoxicity Vestibular toxicity |
Tobramycin | 5 mg/kg IV daily or 3×/week | Nephrotoxicity Ototoxicity Vestibular toxicity |
Linezolid | 20–24 mg/kg/day IV or PO divided Q12, max single dose 600 mg | Myelosuppression Peripheral neuropathy |
Isoniazid | 10–15 mg/kg PO or IM daily, max dose 300 mgb | Hepatotoxicity |
Doxycycline | 4.4 mg/kg/day IV or PO divided Q12, max single dose 100 mg | Photosensitivity Pill esophagitis (if PO) |
Minocycline | ≥8 years: 4 mg/kg IV or PO once (max dose 200 mg), followed by 4 mg/kg/day IV or PO divided Q12 (max single dose 100 mg) | Photosensitivity |
Tigecycline | 8–11 years: 2.4 mg/kg/day IV divided Q12, max single dose 50 mg 12–18 years: 100 mg/day IV divided Q12 | GI intolerance |
Cefoxitin | 160 mg/kg/day IV divided Q6, max single dose 3000 mg | |
Imipenem | 30–40 mg/kg/day IV divided Q12, max single dose 1000 mg | Myelosuppression Hepatotoxicity |
Trimethoprim/sulfamethoxazole | 15 mg/kg/day IV by TMP component, divided Q8, max single dose 320 mg by TMP component | Myelosuppression Rash |
Abbreviations: IM, intramuscular; IV, intravenous; PO, by mouth; Q6, every 6 h dosing; Q8, every 8 h dosing; Q12, every 12 h dosing.
bConsider pyridoxine 1–2 mg/kg/day for patients who are malnourished, patients on milk or meat-deficient diets, breastfeeding infants, and patients predisposed to neuritis.
Treatment of Slow-Growing NTM
Treatment of disease caused by slow-growing NTM is challenging (Table 7). In vitro susceptibility to macrolides and amikacin correlate with clinical outcomes for treatment of M. avium complex disease. The treatment of choice for macrolide-susceptible M. avium complex is a combination of a macrolide, rifamycin, and ethambutol [25, 33, 34]. Rifabutin is a less potent inducer of cytochrome P450 than rifampin and is, therefore, the preferred rifamycin for treatment of SOT recipients, though levels of immunosuppressant medications may still be difficult to maintain. If the isolate is susceptible, intravenous amikacin is added to the 3-drug regimen for cases with severe burden of disease (eg, cavitary lung disease). Intravenous amikacin can be transitioned from daily to thrice weekly for ease of administration [35, 36]. No prospective randomized trials have been conducted on pediatric SOT or HCT recipients to provide evidence-based recommendations regarding optimal dose, duration, or which cases should receive 4 vs 3 drugs (though most would experts would use 4 drugs in severe cases [25, 37]). Therefore, management of each case must be considered individually.
NTM Species . | First Line Regimen . | Second Line Drugs . | Notes . |
---|---|---|---|
M. avium complex Pulmonary disease: 3 drugs 4 drugs in severe disease | Azithromycina Rifabutin Ethambutol | Clarithromycina Rifampin Amikacina or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Never use macrolide monotherapy |
M. kansasii Pulmonary disease: 3 drugs | Rifabutina Ethambutol Azithromycina or Isoniazid | Moxifloxacin Rifampin Azithromycin or clarithromycina Sulfamethoxazole Amikacin or streptomycin | Pulmonary disease: Treat for 12 months. |
M. xenopi Pulmonary disease: 3–4 drugs | Azithromycin and/or moxifloxacin Rifabutin Ethambutol ±4th agent | Azithromycin and moxifloxacin Rifampin Amikacin or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Unclear whether 3 or 4 drugs is superior. |
M. haemophilum Mild to Moderate: 3 drugs Severe: 4 drugs | Azithromycin Rifabutin Ciprofloxacin Severe disease: Amikacin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline | Intrinsic resistance to ethambutol. Variable susceptibility to doxycycline and sulfonamide. |
M. marinum Moderate to Severe: 3 drugs | Azithromycin Ethambutol Extensive disease: Rifabutin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline or minocycline | Treat ≥2 months after resolution and 3–4 months total. |
NTM Species . | First Line Regimen . | Second Line Drugs . | Notes . |
---|---|---|---|
M. avium complex Pulmonary disease: 3 drugs 4 drugs in severe disease | Azithromycina Rifabutin Ethambutol | Clarithromycina Rifampin Amikacina or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Never use macrolide monotherapy |
M. kansasii Pulmonary disease: 3 drugs | Rifabutina Ethambutol Azithromycina or Isoniazid | Moxifloxacin Rifampin Azithromycin or clarithromycina Sulfamethoxazole Amikacin or streptomycin | Pulmonary disease: Treat for 12 months. |
M. xenopi Pulmonary disease: 3–4 drugs | Azithromycin and/or moxifloxacin Rifabutin Ethambutol ±4th agent | Azithromycin and moxifloxacin Rifampin Amikacin or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Unclear whether 3 or 4 drugs is superior. |
M. haemophilum Mild to Moderate: 3 drugs Severe: 4 drugs | Azithromycin Rifabutin Ciprofloxacin Severe disease: Amikacin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline | Intrinsic resistance to ethambutol. Variable susceptibility to doxycycline and sulfonamide. |
M. marinum Moderate to Severe: 3 drugs | Azithromycin Ethambutol Extensive disease: Rifabutin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline or minocycline | Treat ≥2 months after resolution and 3–4 months total. |
aClinically relevant drug susceptibility testing recommended.
NTM Species . | First Line Regimen . | Second Line Drugs . | Notes . |
---|---|---|---|
M. avium complex Pulmonary disease: 3 drugs 4 drugs in severe disease | Azithromycina Rifabutin Ethambutol | Clarithromycina Rifampin Amikacina or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Never use macrolide monotherapy |
M. kansasii Pulmonary disease: 3 drugs | Rifabutina Ethambutol Azithromycina or Isoniazid | Moxifloxacin Rifampin Azithromycin or clarithromycina Sulfamethoxazole Amikacin or streptomycin | Pulmonary disease: Treat for 12 months. |
M. xenopi Pulmonary disease: 3–4 drugs | Azithromycin and/or moxifloxacin Rifabutin Ethambutol ±4th agent | Azithromycin and moxifloxacin Rifampin Amikacin or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Unclear whether 3 or 4 drugs is superior. |
M. haemophilum Mild to Moderate: 3 drugs Severe: 4 drugs | Azithromycin Rifabutin Ciprofloxacin Severe disease: Amikacin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline | Intrinsic resistance to ethambutol. Variable susceptibility to doxycycline and sulfonamide. |
M. marinum Moderate to Severe: 3 drugs | Azithromycin Ethambutol Extensive disease: Rifabutin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline or minocycline | Treat ≥2 months after resolution and 3–4 months total. |
NTM Species . | First Line Regimen . | Second Line Drugs . | Notes . |
---|---|---|---|
M. avium complex Pulmonary disease: 3 drugs 4 drugs in severe disease | Azithromycina Rifabutin Ethambutol | Clarithromycina Rifampin Amikacina or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Never use macrolide monotherapy |
M. kansasii Pulmonary disease: 3 drugs | Rifabutina Ethambutol Azithromycina or Isoniazid | Moxifloxacin Rifampin Azithromycin or clarithromycina Sulfamethoxazole Amikacin or streptomycin | Pulmonary disease: Treat for 12 months. |
M. xenopi Pulmonary disease: 3–4 drugs | Azithromycin and/or moxifloxacin Rifabutin Ethambutol ±4th agent | Azithromycin and moxifloxacin Rifampin Amikacin or streptomycin | Pulmonary disease: Treat for ≥12 months after sputum conversion. Unclear whether 3 or 4 drugs is superior. |
M. haemophilum Mild to Moderate: 3 drugs Severe: 4 drugs | Azithromycin Rifabutin Ciprofloxacin Severe disease: Amikacin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline | Intrinsic resistance to ethambutol. Variable susceptibility to doxycycline and sulfonamide. |
M. marinum Moderate to Severe: 3 drugs | Azithromycin Ethambutol Extensive disease: Rifabutin | Rifampin Azithromycin or clarithromycin Sulfonamide Doxycycline or minocycline | Treat ≥2 months after resolution and 3–4 months total. |
aClinically relevant drug susceptibility testing recommended.
Treatment of M. kansasii typically involves a combination of 3 drugs (Table 7). Rifampin susceptibility testing is important as resistant strains have been associated with treatment failure. For M. kansasii infections, a fixed duration of 12 months may be adequate rather than 12 months after culture conversion [25].
Treatment of Rapid-Growing NTM
There is variability in antibiotic susceptibility among rapid-growing NTM (Table 8). Optimal treatment of M. abscessus is dependent on the subspecies involved: subsp. abscessus and boletti can have constitutive or inducible macrolide resistance. Inducible macrolide resistance is detected by presence of the erythromycin resistance methylase gene, named erm(41), or after 14 days of incubation. In contrast, most isolates of M. abscessus subsp. massiliense are susceptible to macrolides as they lack a functional erm(41) gene. When susceptible, macrolide use has been associated with improved rates of culture conversion and more favorable outcomes based on studies comparing treatments [25, 38]. Determination of M. abscessus subspecies and its susceptibility to macrolides and amikacin are recommended. Other parenteral antibiotics that are generally effective include imipenem, cefoxitin, amikacin, and tigecycline. For pulmonary disease, at least 3 active drugs are recommended for intensive treatment with preference to a macrolide with parenteral treatment when susceptible. In cases where the isolate is resistant to macrolides, 4 drugs may be warranted [25, 37]. Treatment often includes an intensive phase of therapy (4–16 weeks) with several parenteral antibiotics until improvement can be measured. Subsequent transition to a continuation phase using an oral regimen with 3 drugs is reasonable. Mycobacterium chelonae is generally susceptible to tobramycin (more active than amikacin), macrolides (as they do not have an erm(41) gene, though acquired resistance has been reported), clofazimine, imipenem, and sometimes fluoroquinolones [39]. Mycobacterium chelonae is usually resistant to cefoxitin. For pulmonary disease, at least 2 drugs should be used, with at least 3 drugs for severe disease (Table 8). Mycobacterium fortuitum isolates are typically resistant to macrolides but susceptible to fluoroquinolones, doxycycline, sulfonamides, amikacin, cefoxitin, and imipenem. At least 2 drugs should be used for mild disease or 3 drugs for severe disease (Table 8) [16].
NTM Species . | Intensive . | Continuation . | Notes . |
---|---|---|---|
M. abscessus (Macrolide susceptible) | ≥3 drugs total: Parenteral (pick 1–2): Amikacina Imipenem Tigecycline Oral (pick 2): Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. abscessus (Macrolide resistant) | ≥4 drugs total: Parenteral (pick 2): Amikacina Imipenem or cefoxitin Tigecycline Oral (pick 2): Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. chelonae Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Azithromycin PLUS ≥1 other drug: Tobramycin Imipenem Linezolid Tigecycline | Azithromycin PLUS ≥1 other drug: Moxifloxacin Clofazimine Linezolid or tedizolid | Inducible macrolide resistance not possible. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
M. fortuitum Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Moxifloxacin ± another oral agent PLUS ≥1 IV drug: Amikacin Cefoxitin Imipenem | ≥2 oral drugs: Moxifloxacin Sulfonamide Doxycycline or minocycline Clofazimine Linezolid or tedizolid | Most strains have inducible erm gene. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
NTM Species . | Intensive . | Continuation . | Notes . |
---|---|---|---|
M. abscessus (Macrolide susceptible) | ≥3 drugs total: Parenteral (pick 1–2): Amikacina Imipenem Tigecycline Oral (pick 2): Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. abscessus (Macrolide resistant) | ≥4 drugs total: Parenteral (pick 2): Amikacina Imipenem or cefoxitin Tigecycline Oral (pick 2): Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. chelonae Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Azithromycin PLUS ≥1 other drug: Tobramycin Imipenem Linezolid Tigecycline | Azithromycin PLUS ≥1 other drug: Moxifloxacin Clofazimine Linezolid or tedizolid | Inducible macrolide resistance not possible. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
M. fortuitum Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Moxifloxacin ± another oral agent PLUS ≥1 IV drug: Amikacin Cefoxitin Imipenem | ≥2 oral drugs: Moxifloxacin Sulfonamide Doxycycline or minocycline Clofazimine Linezolid or tedizolid | Most strains have inducible erm gene. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
aClinically relevant drug susceptibility testing recommended.
NTM Species . | Intensive . | Continuation . | Notes . |
---|---|---|---|
M. abscessus (Macrolide susceptible) | ≥3 drugs total: Parenteral (pick 1–2): Amikacina Imipenem Tigecycline Oral (pick 2): Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. abscessus (Macrolide resistant) | ≥4 drugs total: Parenteral (pick 2): Amikacina Imipenem or cefoxitin Tigecycline Oral (pick 2): Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. chelonae Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Azithromycin PLUS ≥1 other drug: Tobramycin Imipenem Linezolid Tigecycline | Azithromycin PLUS ≥1 other drug: Moxifloxacin Clofazimine Linezolid or tedizolid | Inducible macrolide resistance not possible. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
M. fortuitum Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Moxifloxacin ± another oral agent PLUS ≥1 IV drug: Amikacin Cefoxitin Imipenem | ≥2 oral drugs: Moxifloxacin Sulfonamide Doxycycline or minocycline Clofazimine Linezolid or tedizolid | Most strains have inducible erm gene. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
NTM Species . | Intensive . | Continuation . | Notes . |
---|---|---|---|
M. abscessus (Macrolide susceptible) | ≥3 drugs total: Parenteral (pick 1–2): Amikacina Imipenem Tigecycline Oral (pick 2): Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Azithromycina Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. abscessus (Macrolide resistant) | ≥4 drugs total: Parenteral (pick 2): Amikacina Imipenem or cefoxitin Tigecycline Oral (pick 2): Clofazimine Omadacycline Linezolid or tedizolid Bedaquline | 2–3 drugs: Clofazimine Omadacycline Linezolid or tedizolid Inhaled amikacin Bedaquiline | Consider drainage/resection |
M. chelonae Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Azithromycin PLUS ≥1 other drug: Tobramycin Imipenem Linezolid Tigecycline | Azithromycin PLUS ≥1 other drug: Moxifloxacin Clofazimine Linezolid or tedizolid | Inducible macrolide resistance not possible. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
M. fortuitum Mild to Moderate: ≥2 drugs Severe: ≥3 drugs | 4–16 weeks: Moxifloxacin ± another oral agent PLUS ≥1 IV drug: Amikacin Cefoxitin Imipenem | ≥2 oral drugs: Moxifloxacin Sulfonamide Doxycycline or minocycline Clofazimine Linezolid or tedizolid | Most strains have inducible erm gene. Pulmonary disease: Treat for ≥12 months after sputum conversion. Extrapulmonary disease: Consider drainage/resection |
aClinically relevant drug susceptibility testing recommended.
CONTROVERSIES AND FUTURE DIRECTIONS
Many pre-transplant strategies attempting to reduce the risk of NTM disease have been proposed. Prophylaxis strategies in SOT candidates colonized with NTM remain poorly defined [40]. Prophylactic azithromycin to prevent surgical site infections in patients colonized with rapid-growing NTM has been considered; however, there are no supporting efficacy data [40]. The optimal duration of treatment for NTM disease prior to lung transplant is unclear. One center reported successful lung transplants in 3 of 4 patients with chronic M. abscessus prior to transplant after receiving aggressive antimicrobial treatment (ie, ≥2 IV and ≥3 oral antibiotics) for at least 12 weeks [41]. A minimum of 6 months of treatment prior to lung transplant was reported in a small study of 5 pediatric lung transplant recipients with M. abscessus [42, 43]. In a recent international survey of transplant surgeons, infectious diseases, and pulmonology specialists, most agreed that mycobacterial respiratory culture should be done prior to lung transplant, regardless of risk factors [44]. For lung transplant candidates with M. avium complex on active treatment and whose most recent sputum culture was negative, most agreed it would be appropriate to transplant. In contrast, the panelists agreed to transplant candidates with M. abscessus with negative cultures for 12 months and for M. kansasii a minimum of 6 months of negative sputum cultures [44]. Some centers consider prior M. abscessus treatment to be a contraindication to transplant though better outcomes are associated with aggressive treatment and surveillance in these high-risk patients [11]. The 2021 International Society for Heart and Lung Transplantation Consensus advises against this as a contraindication, and if transplant is considered, candidates are recommended to seek care at centers with mycobacterial expertise to ensure aggressive treatment before, during, and after the transplant period. In such situations, there should be a full discussion of the risks and benefits of therapy prior to transplant [11].
Intra-operative strategies to reduce the NTM burden prior to transplant have been proposed and novel treatment modalities are on the horizon. Intra-operative amikacin washes at the time of transplant followed by IV treatment [42] and recipient lymph node excision to reduce the overall NTM burden has been suggested [12]. Other experts have recommend withholding anti-thymocyte globulin and reducing tacrolimus and cyclosporin levels to reduce the degree of immune suppression and risk of NTM disease [45]. These strategies are based on expert opinion as no efficacy data exist. Other medications active against NTM but for which there are limited data include dual-beta lactam combinations with or without beta-lactamase inhibitors, clofazimine, bedaquiline, linezolid or tedizolid, and omadacycline [45–47].
Lastly, bacteriophages have been used to treat extremely drug-resistant NTM [48, 49] and may be considered for recalcitrant cases; however, data regarding dosing, host–phage interactions, and efficacy are limited. In the United States, phages are only accessible through single-patient Investigational New Drug applications submitted to the US Food and Drug Administration. As NTM infections continue to emerge in HCT and SOT recipients, more innovative approaches to prevent and treat infection will evolve.
Notes
Financial support. This work was supported by The Otis Child’s Trust (PNC Charitable Trust, UPMC Children’s Foundation, PLL).
Supplement sponsorship. This article appears as part of the supplement “Advances in Pediatric Transplant Infectious Diseases,” sponsored by Eurofins Viracor.
Potential conflicts of interest. JDA—“No conflict,” PLL—“No conflict,” CLD—Consultant: Genentech, Pfizer. Advisory Board Member: AN2, AstraZeneca, Hyfe, Insmed, MannKind, Matinas BioPharma Holdings, Inc., Nob Hill, Paratek Pharmaceuticals, Spero Therapeutics, and Zambon. Data Monitoring Committee: Ostuka Pharmaceutical, Eli Lilly and Company, Bill and Melinda Gates Foundation. Contracted Research: AN2 Therapeutics, Bugworks, Insmed, Juvabis, and Pharmaceuticals.