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Keywords: programming
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Journal Article
Abnormal chenodexycholic acid metabolism programming promotes cartilage matrix degradation in male adult offspring rats induced by prenatal caffeine exposure
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Bin Li and others
Toxicology Research, Volume 14, Issue 3, June 2025, tfaf063, https://doi.org/10.1093/toxres/tfaf063
Published: 05 May 2025
... through the glucocorticoid receptor and histone deacetylase 4, consequently leading to decreased CDCA levels. In summary, our findings suggest that intrauterine low-expression programming of CYP7B1, induced by elevated glucocorticoid levels, reduces local CDCA levels in the cartilage of PCE offspring...
Journal Article
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Integer Programming for Learning Directed Acyclic Graphs from Non-identifiable Gaussian Models
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Tong Xu and others
in
Biometrika
Biometrika, asaf032, https://doi.org/10.1093/biomet/asaf032
Published: 28 April 2025
.... We overcome these shortcomings and develop a computationally efficient mixed-integer programming framework for learning medium-sized problems that accounts for arbitrary heteroscedastic noise. We present an early stopping criterion under which we can terminate the branch-and-bound procedure...
Journal Article
Multi-objective value of information assessment using stochastic programming: addressing uncertainty in site index determination
Olha Nahorna and others
Forestry: An International Journal of Forest Research, cpaf021, https://doi.org/10.1093/forestry/cpaf021
Published: 27 April 2025
... of VoI should reflect the specific forest planning goals and allow for the inclusion of multiple objectives. We present a method that quantifies multi-objective VoI using stochastic programming optimization, enabling the integration of data uncertainty into the planning process. The developed...
Journal Article
Minimal cut sets in metabolic networks: from conceptual foundations to applications in metabolic engineering and biomedicine
Steffen Klamt and others
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf188, https://doi.org/10.1093/bib/bbaf188
Published: 23 April 2025
... networks constraint-based modeling computational strain design metabolic engineering robustness and fragility mixed-integer linear programming Abstract Minimal cut sets (MCSs) have emerged as an important branch of constraint-based metabolic modeling, offering a versatile framework for analyzing...
Journal Article
Techniques for measuring the inferential strength of forgetting policies
Patrick Doherty and Andrzej Szałas
Journal of Logic and Computation, Volume 35, Issue 3, April 2025, exaf023, https://doi.org/10.1093/logcom/exaf023
Published: 22 April 2025
.... Properties of such loss measures are studied and a pragmatic knowledge engineering tool is proposed for computing loss measures using a well-known probabilistic logic programming language ProbLog . This paper includes a working methodology for studying and determining the strength of different...
Journal Article
Plus-minus models for evaluating and scouting soccer players using possession sequences
Robert Bajons and Kurt Hornik
IMA Journal of Management Mathematics, dpaf017, https://doi.org/10.1093/imaman/dpaf017
Published: 17 April 2025
... programming Evaluating player performances in soccer has attracted a lot of interest in the last decade. Due to the low-scoring and complex nature of the sport, accurately measuring a player’s contribution to the game is a challenging task. However, evaluating individual performances in team sports...
Journal Article
Placental physiology and fetal programming in ruminants under heat stress
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Leticia T Casarotto and others
Biology of Reproduction, ioaf047, https://doi.org/10.1093/biolre/ioaf047
Published: 16 March 2025
... development. Heat stress is one of the most common stressors experienced by mammals, and recent evidence suggests a role in the programming of the dam and fetus. This review explores different hypotheses of fetal programming, including the Barker hypothesis, which connects early-life malnutrition to metabolic...
Journal Article
Image-based quantification of Candida albicans filamentation and hyphal length using the open-source visual programming language JIPipe
Jan-Philipp Praetorius and others
FEMS Yeast Research, Volume 25, 2025, foaf011, https://doi.org/10.1093/femsyr/foaf011
Published: 13 March 2025
... These two authors contributed equally to this work. Graphical Abstract Figure. Image-based quantification of Candida albicans germination and filamentation using the open-source visual programming language ...
Journal Article
Perinatal nutritional effects on postpubertal secretion of gonadotropins and feedback responsiveness to estradiol-17β in sexually mature heifers
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Viviana Garza and others
Journal of Animal Science, Volume 103, 2025, skaf065, https://doi.org/10.1093/jas/skaf065
Published: 07 March 2025
... (E2) negative and positive feedback responsiveness in adulthood. Heifers were selected from a larger population programmed nutritionally using a 3 × 2 factorial arrangement of pre- and postnatal diets. Beginning at 90 d of pregnancy, Bos indicus-influenced cows (n = 95) bearing...
Journal Article
Late gestation maternal overnutrition alters gene expression and histomorphology in neonatal foal testes
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Alex M Trauner and others
Journal of Animal Science, Volume 103, 2025, skaf060, https://doi.org/10.1093/jas/skaf060
Published: 27 February 2025
..., and steroidogenesis. These results indicate potential for long-term implications via reduced offspring reproductive potential in horses. fetal programming foal horse overnutrition testes Fetal programming describes how environmental factors during fetal development play a role in offspring health and production...
Journal Article
FORAlign: accelerating gap-affine DNA pairwise sequence alignment using FOR-blocks based on Four Russians approach with linear space complexity
Yanming Wei and others
Briefings in Bioinformatics, Volume 26, Issue 1, January 2025, bbaf061, https://doi.org/10.1093/bib/bbaf061
Published: 23 February 2025
.../malabz/FORAlign . sequence alignment four Russians speedup dynamic programming parallel algorithm design Xidian University 10.13039/501100005320 TZJH2024027 National Natural Science Foundation of China 10.13039/501100001809 62472344 62452107 62072353 62272065 Multiple sequence...
Journal Article
Degrees-of-freedom penalized piecewise regression
Stefan Volz and others
Information and Inference: A Journal of the IMA, Volume 14, Issue 1, March 2025, iaaf002, https://doi.org/10.1093/imaiai/iaaf002
Published: 21 February 2025
... variant of the proposed method gives state-of-the-art results in the Turing benchmark for unsupervised changepoint detection. piecewise regression fast algorithm penalized least squares non-convex optimization model selection dynamic programming signal estimation signal processing Assume we...
Journal Article
Enhancing Hepatitis B Virus Vaccine Uptake and Immunity Through Long-Acting Antiretroviral Therapy Programmatic Synergy in the US South
Eudiah Ochieng and others
Open Forum Infectious Diseases, Volume 12, Issue 3, March 2025, ofaf096, https://doi.org/10.1093/ofid/ofaf096
Published: 19 February 2025
... was 35 years (IQR, 28–47) at the time of initiation, and 90% identified as Black, 28% as cisgender women, and 8% as transgender women. The median CD4 count and percentage were 494 cells/mm3 (IQR, 282–753) and 28% (IQR, 19%–37%). Table 1 summarizes HBV status upon initiation, program...
Journal Article
Maternal exercise before and during pregnancy protects against genotoxicity and promotes offspring hippocampal health in mice prenatally exposed to high fructose
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Marina Lummertz Magenis and others
in
Mutagenesis
Mutagenesis, Volume 40, Issue 2, April 2025, Pages 145–463, https://doi.org/10.1093/mutage/geaf001
Published: 13 January 2025
... de Feveri; Sabine A S Langie; Roger Godschalk; Vanessa Moraes de Andrade Corresponding author. Laboratory of Translational Biomedicine, Graduate Program of Health Sciences, Department of Health Sciences, University of Southern Santa Catarina, UNESC, 1105, Universitária Rd, 88806000, Criciúma, Santa...
Journal Article
Effects of maternal Cu, Mn, and Zn supplementation from different sources on physiological and productive responses of cows and their offspring
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Vinicius Alves Cruz and others
Journal of Animal Science, Volume 103, 2025, skae391, https://doi.org/10.1093/jas/skae391
Published: 01 January 2025
... ). Nevertheless, limited knowledge exists regarding different sources of trace minerals for late-gestating beef cows and their impacts on offspring productivity. beef cows fetal programming hydroxychloride organic-complexed sulfate trace minerals Lay Summary Trace minerals like Zn, Cu, and Mn play...
Journal Article
New indices to track interoperability among US hospitals
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Catherine E Strawley and others
Journal of the American Medical Informatics Association, Volume 32, Issue 2, February 2025, Pages 318–327, https://doi.org/10.1093/jamia/ocae289
Published: 26 December 2024
... design of 3 mutually exclusive indices: (1) foundational interoperability technologies and practices (the Core Index); (2) the adoption of novel interoperability technologies, including practices relevant to engaging patients, the use of application programming interfaces (APIs), and information exchange...
Journal Article
Three-stage location-routing programming for heavy-duty railway maintenance machinery base based on multi-factor combined weights
Jin Wang and others
Intelligent Transportation Infrastructure, Volume 3, 2024, liae022, https://doi.org/10.1093/iti/liae022
Published: 17 December 2024
... validate the model’s and algorithm’s efficacy, confirming their applicability in real-world scenarios. heavy-duty railway maintenance machinery location-routing programming location evaluation index game theory National Natural Science Foundation of China 10.13039/501100001809 U1734208 National...
Journal Article
Melatonin supplementation to sows in mid to late gestation affects offspring circadian, myogenic, and growth factor transcript abundance in pre and postnatal skeletal muscle
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Thomas W Dobbins and others
Journal of Animal Science, Volume 102, 2024, skae377, https://doi.org/10.1093/jas/skae377
Published: 16 December 2024
...-birth-weight piglets from large litters. circadian rhythm fetal programming gene expression growth and development melatonin pregnancy skeletal muscle swine National Institute of Food and Agriculture 10.13039/100005825 1024664 U.S. Department of Agriculture 10.13039/100000199 1024664...
Journal Article
A pre- and postnatal immune challenge influences muscle growth and metabolism in weaned pigs
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Thomas W Dobbins and others
Journal of Animal Science, Volume 102, 2024, skae350, https://doi.org/10.1093/jas/skae350
Published: 12 November 2024
..., there were no differences in liver metabolism. The differences in muscle fiber measurements and alterations in muscle metabolism indicate the potential for altered growth of offspring from immune stimulated dams. fetal programming immune challenge lipopolysaccharide metabolomics skeletal muscle...
Journal Article
Static output feedback control for positive 2D discrete systems in Roesser model
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Mohamed Bolajraf
IMA Journal of Mathematical Control and Information, Volume 41, Issue 4, December 2024, Pages 647–660, https://doi.org/10.1093/imamci/dnae030
Published: 26 October 2024
... Programming, which can be easily verified by using standard numerical software. Finally, several numerical examples are included to illustrate the validity and the effectiveness of the developed results. 2D systems stabilization positive systems positive control positive Roesser model linear programming...