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Authors: Yousong Peng
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Journal Article

Comprehensive Characterization of the Integrin Family Across 32 Cancer Types Open Access

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Cheng Zou and others
Genomics, Proteomics & Bioinformatics, Volume 22, Issue 4, August 2024, qzae035, https://doi.org/10.1093/gpbjnl/qzae035
Published: 09 May 2024
Journal Article

PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network Open Access

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Jing Meng and others
Briefings in Bioinformatics, Volume 25, Issue 2, March 2024, bbae033, https://doi.org/10.1093/bib/bbae033
Published: 10 February 2024
Journal Article

VIGA: a one-stop tool for eukaryotic virus identification and genome assembly from next-generation-sequencing data Open Access

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Ping Fu and others
Briefings in Bioinformatics, Volume 25, Issue 1, January 2024, bbad444, https://doi.org/10.1093/bib/bbad444
Published: 02 December 2023
Journal Article
EDITOR'S CHOICE

The bZIP transcription factor BATF3/ZIP-10 suppresses innate immunity by attenuating PMK-1/p38 signaling Free

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Muhammad Irfan Afridi and others
International Immunology, Volume 35, Issue 4, April 2023, Pages 181–196, https://doi.org/10.1093/intimm/dxac053
Published: 21 November 2022
Journal Article

vsRNAfinder: a novel method for identifying high-confidence viral small RNAs from small RNA-Seq data Free

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Zena Cai and others
Briefings in Bioinformatics, Volume 23, Issue 6, November 2022, bbac496, https://doi.org/10.1093/bib/bbac496
Published: 15 November 2022
Journal Article

An atlas of human viruses provides new insights into diversity and tissue tropism of human viruses Free

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Sifan Ye and others
Bioinformatics, Volume 38, Issue 11, June 2022, Pages 3087–3093, https://doi.org/10.1093/bioinformatics/btac275
Published: 18 April 2022
Journal Article

Classification and characterization of multigene family proteins of African swine fever viruses Free

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Zhaozhong Zhu and others
Briefings in Bioinformatics, Volume 22, Issue 4, July 2021, bbaa380, https://doi.org/10.1093/bib/bbaa380
Published: 18 December 2020
Journal Article

Comparative viromes of Culicoides and mosquitoes reveal their consistency and diversity in viral profiles Free

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Lin Liu and others
Briefings in Bioinformatics, Volume 22, Issue 4, July 2021, bbaa323, https://doi.org/10.1093/bib/bbaa323
Published: 14 December 2020
Journal Article

Identification and characterization of circRNAs encoded by MERS-CoV, SARS-CoV-1 and SARS-CoV-2 Free

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Zena Cai and others
Briefings in Bioinformatics, Volume 22, Issue 2, March 2021, Pages 1297–1308, https://doi.org/10.1093/bib/bbaa334
Published: 02 December 2020
Journal Article

Compositional diversity and evolutionary pattern of coronavirus accessory proteins Free

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Jingzhe Shang and others
Briefings in Bioinformatics, Volume 22, Issue 2, March 2021, Pages 1267–1278, https://doi.org/10.1093/bib/bbaa262
Published: 30 October 2020
Journal Article

VirusCircBase: a database of virus circular RNAs Free

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Zena Cai and others
Briefings in Bioinformatics, Volume 22, Issue 2, March 2021, Pages 2182–2190, https://doi.org/10.1093/bib/bbaa052
Published: 29 April 2020
Journal Article

Phage protein receptors have multiple interaction partners and high expressions Free

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Zheng Zhang and others
Bioinformatics, Volume 36, Issue 10, May 2020, Pages 2975–2979, https://doi.org/10.1093/bioinformatics/btaa123
Published: 25 February 2020
Journal Article

FluPhenotype—a one-stop platform for early warnings of the influenza A virus Free

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Congyu Lu and others
Bioinformatics, Volume 36, Issue 10, May 2020, Pages 3251–3253, https://doi.org/10.1093/bioinformatics/btaa083
Published: 12 February 2020
Journal Article

Cluster-Transition Determining Sites Underlying the Antigenic Evolution of Seasonal Influenza Viruses Free

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Lijun Quan and others
Molecular Biology and Evolution, Volume 36, Issue 6, June 2019, Pages 1172–1186, https://doi.org/10.1093/molbev/msz050
Published: 09 March 2019
Journal Article

RAEdb: a database of enhancers identified by high-throughput reporter assays Open Access

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Zena Cai and others
Database, Volume 2019, 2019, bay140, https://doi.org/10.1093/database/bay140
Published: 08 January 2019
Journal Article

Cell membrane proteins with high N-glycosylation, high expression and multiple interaction partners are preferred by mammalian viruses as receptors Free

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Zheng Zhang and others
Bioinformatics, Volume 35, Issue 5, March 2019, Pages 723–728, https://doi.org/10.1093/bioinformatics/bty694
Published: 09 August 2018
Journal Article

cooccurNet: an R package for co-occurrence network construction and analysis Free

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Yuanqiang Zou and others
Bioinformatics, Volume 33, Issue 12, June 2017, Pages 1881–1882, https://doi.org/10.1093/bioinformatics/btx062
Published: 08 February 2017
Journal Article

PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences Free

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Yousong Peng and others
Bioinformatics, Volume 32, Issue 16, August 2016, Pages 2526–2527, https://doi.org/10.1093/bioinformatics/btw185
Published: 12 April 2016