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Authors: Matthew W. Hahn
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Journal Article

The Meaning and Measure of Concordance Factors in Phylogenomics Open Access

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Robert Lanfear and Matthew W Hahn
Molecular Biology and Evolution, Volume 41, Issue 11, November 2024, msae214, https://doi.org/10.1093/molbev/msae214
Published: 17 October 2024
Journal Article

Selection leads to false inferences of introgression using popular methods Get access

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Megan L Smith and Matthew W Hahn
Genetics, Volume 227, Issue 4, August 2024, iyae089, https://doi.org/10.1093/genetics/iyae089
Published: 28 May 2024
Journal Article

MAST: Phylogenetic Inference with Mixtures Across Sites and Trees Open Access

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Thomas K F Wong and others
Systematic Biology, Volume 73, Issue 2, March 2024, Pages 375–391, https://doi.org/10.1093/sysbio/syae008
Published: 29 February 2024
Journal Article

Phylogenetic inference using generative adversarial networks Open Access

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Megan L Smith and Matthew W Hahn
Bioinformatics, Volume 39, Issue 9, September 2023, btad543, https://doi.org/10.1093/bioinformatics/btad543
Published: 05 September 2023
Journal Article

Searching and visualizing genetic associations of pregnancy traits by using GnuMoM2b Free

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Qi Yan and others
Genetics, Volume 225, Issue 2, October 2023, iyad151, https://doi.org/10.1093/genetics/iyad151
Published: 21 August 2023
Journal Article

CAGEE: Computational Analysis of Gene Expression Evolution Open Access

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Jason Bertram and others
Molecular Biology and Evolution, Volume 40, Issue 5, May 2023, msad106, https://doi.org/10.1093/molbev/msad106
Published: 09 May 2023
Journal Article

Updated site concordance factors minimize effects of homoplasy and taxon sampling Open Access

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Yu K Mo and others
Bioinformatics, Volume 39, Issue 1, January 2023, btac741, https://doi.org/10.1093/bioinformatics/btac741
Published: 16 November 2022
Journal Article

High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS Open Access

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Douglas B Rusch and others
ISME Communications, Volume 2, Issue 1, December 2022, 99, https://doi.org/10.1038/s43705-022-00183-8
Published: 10 October 2022
Journal Article

Examining the Effects of Hibernation on Germline Mutation Rates in Grizzly Bears Open Access

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Richard J Wang and others
Genome Biology and Evolution, Volume 14, Issue 10, October 2022, evac148, https://doi.org/10.1093/gbe/evac148
Published: 29 September 2022
Journal Article

De novo Mutations in Domestic Cat are Consistent with an Effect of Reproductive Longevity on Both the Rate and Spectrum of Mutations Open Access

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Richard J Wang and others
Molecular Biology and Evolution, Volume 39, Issue 7, July 2022, msac147, https://doi.org/10.1093/molbev/msac147
Published: 30 June 2022
Journal Article

Using all Gene Families Vastly Expands Data Available for Phylogenomic Inference Open Access

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Megan L. Smith and others
Molecular Biology and Evolution, Volume 39, Issue 6, June 2022, msac112, https://doi.org/10.1093/molbev/msac112
Published: 01 June 2022
Journal Article

Corrigendum to: Phylogenomic approaches to detecting and characterizing introgression Free

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Mark S Hibbins and Matthew W Hahn
Genetics, Volume 220, Issue 2, February 2022, iyab220, https://doi.org/10.1093/genetics/iyab220
Published: 07 January 2022
Journal Article

The Frequency and Topology of Pseudoorthologs Free

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Megan L Smith and Matthew W Hahn
Systematic Biology, Volume 71, Issue 3, May 2022, Pages 649–659, https://doi.org/10.1093/sysbio/syab097
Published: 24 December 2021
Journal Article

Phylogenomic approaches to detecting and characterizing introgression Open Access

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Mark S Hibbins and Matthew W Hahn
Genetics, Volume 220, Issue 2, February 2022, iyab173, https://doi.org/10.1093/genetics/iyab173
Published: 11 November 2021
Journal Article

Species Tree Inference Methods Intended to Deal with Incomplete Lineage Sorting Are Robust to the Presence of Paralogs Open Access

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Zhi Yan and others
Systematic Biology, Volume 71, Issue 2, March 2022, Pages 367–381, https://doi.org/10.1093/sysbio/syab056
Published: 10 July 2021
Journal Article

Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits Open Access

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Cheng Sun and others
Molecular Biology and Evolution, Volume 38, Issue 7, July 2021, Page 3031, https://doi.org/10.1093/molbev/msab100
Published: 20 May 2021
Journal Article

Inferring the Genetic Basis of Sex Determination from the Genome of a Dioecious Nightshade Open Access

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Meng Wu and others
Molecular Biology and Evolution, Volume 38, Issue 7, July 2021, Pages 2946–2957, https://doi.org/10.1093/molbev/msab089
Published: 26 March 2021
Journal Article

CAFE 5 models variation in evolutionary rates among gene families Free

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Fábio K Mendes and others
Bioinformatics, Volume 36, Issue 22-23, December 2020, Pages 5516–5518, https://doi.org/10.1093/bioinformatics/btaa1022
Published: 16 December 2020
Journal Article

Distinct error rates for reference and nonreference genotypes estimated by pedigree analysis Free

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Richard J Wang and others
Genetics, Volume 217, Issue 1, January 2021, iyaa014, https://doi.org/10.1093/genetics/iyaa014
Published: 10 December 2020
Journal Article

Origins and Long-Term Patterns of Copy-Number Variation in Rhesus Macaques Open Access

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Gregg W C Thomas and others
Molecular Biology and Evolution, Volume 38, Issue 4, April 2021, Pages 1460–1471, https://doi.org/10.1093/molbev/msaa303
Published: 23 November 2020