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Authors: Klaas Vandepoele
Journal Article
Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses Get access
Journal of Experimental Botany, Volume 75, Issue 15, 12 August 2024, Pages 4655–4670, https://doi.org/10.1093/jxb/erae235
Published: 30 May 2024
Journal Article
Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots Free
Plant Physiology, Volume 193, Issue 3, November 2023, Pages 1933–1953, https://doi.org/10.1093/plphys/kiad360
Published: 22 June 2023
Journal Article
Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses Free
Plant Physiology, Volume 193, Issue 3, November 2023, Pages 2071–2085, https://doi.org/10.1093/plphys/kiad215
Published: 13 April 2023
Journal Article
Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division Free
Plant Physiology, Volume 191, Issue 3, March 2023, Pages 1574–1595, https://doi.org/10.1093/plphys/kiac528
Published: 24 November 2022
Journal Article
Identification of growth regulators using cross-species network analysis in plants Free
Plant Physiology, Volume 190, Issue 4, December 2022, Pages 2350–2365, https://doi.org/10.1093/plphys/kiac374
Published: 19 August 2022
Journal Article
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles Open Access
Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022, Pages D165–D173, https://doi.org/10.1093/nar/gkab1113
Published: 30 November 2021
Journal Article
PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants Open Access
Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022, Pages D1468–D1474, https://doi.org/10.1093/nar/gkab1024
Published: 08 November 2021
Journal Article
Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage Open Access
Genome Biology and Evolution, Volume 13, Issue 10, October 2021, evab216, https://doi.org/10.1093/gbe/evab216
Published: 01 October 2021
Journal Article
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors Free
Journal of Experimental Botany, Volume 72, Issue 22, 4 December 2021, Pages 7927–7941, https://doi.org/10.1093/jxb/erab373
Published: 13 August 2021
Journal Article
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes Open Access
Nucleic Acids Research, Volume 49, Issue 17, 27 September 2021, Page e101, https://doi.org/10.1093/nar/gkab565
Published: 01 July 2021
Journal Article
Comparative genomics reveals new functional insights in uncultured MAST species Open Access
The ISME Journal, Volume 15, Issue 6, June 2021, Pages 1767–1781, https://doi.org/10.1038/s41396-020-00885-8
Published: 15 January 2021
Journal Article
Comment on ‘Hayai-Annotation Plants: an ultrafast and comprehensive functional gene annotation system in plants’: the importance of taking the GO graph structure into account Open Access
Bioinformatics, Volume 36, Issue 22-23, December 2020, Pages 5558–5560, https://doi.org/10.1093/bioinformatics/btaa1052
Published: 21 December 2020
Journal Article
A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies Open Access
Nucleic Acids Research, Volume 49, Issue 1, 11 January 2021, Page e3, https://doi.org/10.1093/nar/gkaa1041
Published: 21 November 2020
Journal Article
The medium-size noncoding RNA transcriptome of Ostreococcus tauri, the smallest living eukaryote, reveals a large family of small nucleolar RNAs displaying multiple genomic expression strategies Open Access
NAR Genomics and Bioinformatics, Volume 2, Issue 4, December 2020, lqaa080, https://doi.org/10.1093/nargab/lqaa080
Published: 09 October 2020
Journal Article
Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta Open Access
The ISME Journal, Volume 15, Issue 2, February 2021, Pages 562–576, https://doi.org/10.1038/s41396-020-00797-7
Published: 07 October 2020
Journal Article
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate Open Access
The ISME Journal, Volume 15, Issue 1, January 2021, Pages 154–167, https://doi.org/10.1038/s41396-020-00770-4
Published: 12 September 2020
Journal Article
Comprehensive and Functional Analysis of Horizontal Gene Transfer Events in Diatoms Free
Molecular Biology and Evolution, Volume 37, Issue 11, November 2020, Pages 3243–3257, https://doi.org/10.1093/molbev/msaa182
Published: 16 July 2020
Journal Article
Enhanced Maps of Transcription Factor Binding Sites Improve Regulatory Networks Learned from Accessible Chromatin Data Open Access
Plant Physiology, Volume 181, Issue 2, October 2019, Pages 412–425, https://doi.org/10.1104/pp.19.00605
Published: 25 July 2019
Journal Article
Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants Open Access
Molecular Biology and Evolution, Volume 36, Issue 5, May 2019, Pages 974–989, https://doi.org/10.1093/molbev/msz031
Published: 19 February 2019
Journal Article
Curse: building expression atlases and co-expression networks from public RNA-Seq data Free
Bioinformatics, Volume 35, Issue 16, August 2019, Pages 2880–2881, https://doi.org/10.1093/bioinformatics/bty1052
Published: 24 December 2018
