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Volume 230, Issue 5, 15 November 2024
Editorial Commentary
A Glass-Half-Full Perspective on Negative Data in Ebolavirus Vaccine Studies
Viewpoint
Measles: What Goes Around, Comes Around
Measles cases are increasing globally and in the United States because of low routine measles vaccine coverage and disruptions to immunization services during the coronavirus disease 2019 (COVID-19) pandemic. To achieve and sustain measles elimination requires maintaining high coverage with 2 doses of measles vaccine, addressing vaccine hesitancy and misinformation, strong political commitment, and the necessary financial resources.
Special Article
Building the Future of Infectious Diseases: A Call to Action for Quality Improvement Research and Measurement
Quality measurement research and development are critical to the future of infectious diseases in the era of value-based care. Prioritizing quality measurement will bolster the infectious diseases workforce, driving greater recognition of the specialty's value and contribution to clinical outcomes.
ID Translational Science Update
Applications of Machine Learning on Electronic Health Record Data to Combat Antibiotic Resistance
The abundance of clinical publications using machine learning models places demands on clinicians seeking to properly critique and interpret these results. This review illustrates best practices and pitfalls inherent to handling electronic health record data and employing machine learning.
Major Articles and Brief Reportss
Viral Disease Pathogenesis
A Bivalent Adenovirus-Vectored Vaccine Induces a Robust Humoral Response, but Does Not Protect Cynomolgus Macaques Against a Lethal Challenge With Sudan Virus
ChAdOx1-biEBOV, an adeno-vectored vaccine encoding the glycoproteins of Sudan and Ebola virus, induces a robust humoral response but does not protect against Sudan virus challenge in cynomolgus macaques.
A Phase 1, Double-Blinded, Placebo-Controlled Clinical Trial to Evaluate the Safety and Immunogenicity of HEV-239 (Hecolin) Vaccine in Healthy US Adults
In this phase 1, randomized, double-blinded, placebo-controlled trial, the recombinant hepatitis E virus vaccine (HEV-239) was found to be safe and immunogenic through at least 6 months in healthy US adults.
Serological Evidence of Mpox Virus Infection During Peak Mpox Transmission in New York City, July to August 2022
A New York City serosurvey in Summer 2022 found that 6% of participants without prior mpox diagnoses or histories of smallpox or mpox vaccination had antibodies to mpox, indicating the presence of infections that can contribute to asymptomatic transmission.
Mpox-Specific Immune Responses Elicited by Vaccination or Infection in People With HIV
This study improves our understanding of smallpox vaccination-mediated cross-reactivity to orthopox viruses and the durability of childhood smallpox vaccination-mediated immune responses in PWH. Both MVA vaccination and mpox infection evoked mpox-specific immune responses mediated by T and B cells.
Diagnosing Polyomavirus Nephropathy Without a Biopsy: Validation of the Urinary Polyomavirus-Haufen Test in a Proof-of-Concept Study Including Uromodulin Knockout Mice
Our multistep proof-of-concept study demonstrates that the urinary polyomavirus (PyV)-haufen test is specific for PyV-induced end-organ kidney injury with lytic viral replication (ie, BKPyV nephropathy). Thus, the biomarker can now be incorporated into management guidelines for kidney transplant recipients.
Respiratory Syncytial Virus vs Influenza Virus Infection: Mortality and Morbidity Comparison Over 7 Epidemic Seasons in an Elderly Population
Among patients aged >75 years presenting at the emergency department with respiratory or infectious symptoms, respiratory syncytial virus shares a comparable mortality rate with influenza but is associated with higher rates of lower tract respiratory infection, pneumonia, hospitalization, intensive care unit admissions, and extended hospital stays.
Association of Dynamics of Anellovirus Loads With Hospital-Acquired Pneumonia in Patients With Brain Injury During the Intensive Care Unit Stay
In a cohort of patients with brain injury, longitudinal analysis of anelloviruses showed a decrease in viral loads associated with hospital-acquired pneumonia and acute respiratory distress syndrome in blood and respiratory samples, suggesting changes in virome composition possibly linked to immune disturbances.
Protective Role of NS1-Specific Antibodies in the Immune Response to Dengue Virus Through Antibody-Dependent Cellular Cytotoxicity
Antibodies to dengue virus NS1 protein activated NK cells and mediated antibody-dependent cellular cytotoxicity. Higher preexposure antibody responses to NS1 in cohort subjects who experienced subclinical compared to symptomatic dengue virus infections point to a protective role against illness.
Clinical Severity of Enteric Viruses Detected Using a Quantitative Molecular Assay Compared With Conventional Assays in the Global Enteric Multicenter Study
Children <5 years old with rotavirus had the highest clinical severity compared with other gastrointestinal viruses. Rotavirus and adenovirus 40/41 cases detected only with quantitative molecular assays were slightly less severe than cases detected with conventional enzyme immunoassays.
Rotavirus Hospitalization in Early Childhood: Fine Motor Skills and Cognition at 6 Years Old in a Population-Based Cohort Study
The occurrence of rotavirus-related hospitalizations during early childhood is linked to suspected delays in neurodevelopment among 6 year olds, particularly evident in fine motor function and cognition.
COVID-2019 Disease Pathogenesis
Safety and Efficacy of SAB-185 for Nonhospitalized Adults With COVID-19: A Randomized Clinical Trial
In a randomized controlled trial of anti-SARS-CoV-2 polyclonal antibody SAB-185 compared to casirivimab/imdevimab, efficacy against hospitalizations/deaths could not be determined due to low event rates with Omicron. SAB-185 demonstrated acceptable safety, with faster symptom resolution in the Omicron population.
SARS-CoV-2 Monoclonal Antibody Treatment Followed by Vaccination Shifts Human Memory B-Cell Epitope Recognition, Suggesting Antibody Feedback
We report for the first time the effect of monoclonal antibody (mAb) treatment on SARS-CoV-2–specific human memory B cells of SARS-CoV-2–infected humans receiving, or not receiving, mRNA immunization. Our data show that mAb treatment alters later immune memory responses to vaccination.
Reduced Likelihood of Hospitalization With the JN.1 or HV.1 Severe Acute Respiratory Syndrome Coronavirus 2 Variants Compared With the EG.5 Variant
Within a viral genomic surveillance program, the proportions of severe acute respiratory syndrome coronavirus 2 infections from JN.1 and HV.1 variants, compared with EG.5, were lower among inpatients versus outpatients. These variants may pose a lower risk of severe illness.
HIV/AIDs
Improvement in the 95-95-95 Targets Is Accompanied by a Reduction in Both the Human Immunodeficiency Virus Transmission Rate and Incidence in China
The improvements in the 95-95-95 targets in China were accompanied by a reduction in both the population-level HIV transmission rate and incidence. These reductions may indicate the effectiveness of the WHO/UNAIDS-recommended “treat all” policy that has been implemented for 7 years.
Postmortem Analysis of Dolutegravir, Tenofovir, Lamivudine, and Efavirenz Penetration in Multiple Central Nervous System Compartments
Postmortem analysis of CNS tissues reveals heterogenous antiretroviral distribution.
Dolutegravir- Versus Efavirenz-Based Treatment in Pregnancy: Impact on Red Blood Cell Folate Concentrations in Pregnant Women and Their Infants
Our findings from the randomized controlled clinical trial IMPAACT 2010/VESTED suggest that cellular uptake of folate and transport of folate to the infant do not differ in pregnant women starting dolutegravir- versus efavirenz-based antiretroviral therapy (nor tenofovir alafenamide vs tenofovir disoproxil fumarate).
Bacterial & TB Disease Pathogenesis
Serum Gasdermin D for Early Diagnosis of Bloodstream Infection and Differentiating Bacterial From Fungal Infections
Pneumococci Isolated From Children in Community-Based Practice Differ From Isolates Identified by Population- and Laboratory-Based Invasive Disease Surveillance
Pneumococcal isolates from nasopharyngeal colonization and middle ear fluid from community-based children with acute otitis media in Rochester, New York, differ in serotype distribution and antibiotic susceptibility compared to invasive pneumococcal disease isolates from multisite active laboratory- and population-based surveillance.
The Capsular Polysaccharide Obstructs Wall Teichoic Acid Functions in Staphylococcus aureus
Capsule and wall teichoic acids shape the cell envelope of Staphylococcus aureus and are key virulence determinants of the bacterium. We show the capsule obstructs major functions of wall teichoic acids such as cell adhesion, phage absorption, and IgG deposition.
Safety and Immunogenicity of the H56:IC31 Tuberculosis Vaccine Candidate in Adults Successfully Treated for Drug-Susceptible Pulmonary Tuberculosis: A Phase 1 Randomized Trial
The subunit tuberculosis (TB) vaccine candidate H56:IC31 is safe and induces a predominant CD4+ T-cell response in adults recently treated for drug-susceptible, uncomplicated pulmonary TB.
Assessment for Antibodies to Rifapentine and Isoniazid in Persons Developing Flu-Like Reactions During Treatment of Latent Tuberculosis Infection
We detected anti-rifapentine and anti-isoniazid antibodies, but there was no correlation between presence of antibodies and development of flu-like reactions among persons who received 3 months of weekly isoniazid plus rifapentine or 9 months of daily isoniazid for M. tuberculosis infection.
Fungi
Specific Depletion of Myeloid-Derived Suppressor Cells by the Chemotherapy Agent 5-Fluorouracil Enhances Protective Immune Response in Paracoccidioidomycosis
The beneficial effect of low-dose chemotherapy drug 5-FU was observed following the selective depletion of MDSCs, leading to improved Th1 and Th17 responses in the infectious disease paracoccidioidomycosis, without adversely affecting other immunological populations.
Antigen Titers in Cryptococcal Meningitis: What Determines How Fast They Fall?
Cryptococcal polysaccharide antigen persisted in the serum and cerebrospinal fluid of patients with cryptococcal meningitis far beyond clinical cure, falling more slowly in serum than cerebrospinal fluid and in Cryptococcus gattii than Cryptococcus neoformans infection and more slowly in patients with a ventriculoperitoneal shunt.
Online-Only Articles
Viral Disease Pathogenesis
Inconsistent Increase in Age at Respiratory Syncytial Virus Hospitalization of Children Aged <2 Years During the Severe Acute Respiratory Syndrome Coronavirus 2 Pandemic: A Retrospective Multicenter Study in 4 European Countries
During the SARS-CoV-2 pandemic, respiratory syncytial virus hospitalization patterns in children aged <2 years changed. Although a shift to older age was seen in the Netherlands, we did not observe an increase in age in the other 3 participating countries in Europe.
Humoral Immunogenicity of mRNA-1345 RSV Vaccine in Older Adults
mRNA-1345 vaccine enhanced levels of RSV-A and RSV-B neutralizing antibody and preF binding antibody compared with placebo in adults (≥60 years) across various subgroups, including those at risk for severe disease, consistent with its demonstrated efficacy in the prevention of RSV disease.
Residency in Long-Term Care Facilities: An Important Risk Factor for Respiratory Syncytial Virus Hospitalization
In a 3-year prospective, population-based incidence study, respiratory syncytial virus hospitalization rates among adults aged ≥65 years were 3–9 and 3–4 times higher for those admitted from assisted living or skilled nursing facilities, respectively, compared with community-dwelling adults.
Hepatitis B Virus and Hepatitis C Virus Affect Mitochondrial Function Through Different Metabolic Pathways, Explaining Virus-Specific Clinical Features of Chronic Hepatitis
HBV and HCV impair mitochondrial function. HCV infection reduces breakdown of fat, causing lipid accumulation and fatty liver disease. HBV infection affects pyruvate processing resulting in lactate accumulation, causing cellular stress and increasing the risk of liver disease and cancer.
Nasal and Pharyngeal Mucosal Immunity to Poliovirus in Children Following Routine Immunization With Inactivated Polio Vaccine in the United States
This study provides policy-relevant evidence that children routinely immunized with inactivated polio vaccine in the United States and who had no known contact with a live poliovirus had detectable nasal and pharyngeal mucosal immunity to poliovirus.
Results of a Nationally Representative Seroprevalence Survey of Chikungunya Virus in Bangladesh
We use a nationally representative seroprevalence study to estimate the underlying burden of chikungunya before a major outbreak in 2017. We found that the population had very limited immunity at the time, but the vector was widespread.
Prevalence of Oral Human Papillomavirus Infection Among Urban Gay, Bisexual, and Other Men Who Have Sex With Men in Canada, 2017–2019
In a cohort of young Canadian gay, bisexual, and other men who have sex with men (approximately 37% vaccinated), prevalence of oral human papillomavirus infection was relatively low overall with estimates higher for those unvaccinated compared to those vaccinated.
Evaluation of a Novel Point-of-Care Blood Myxovirus Resistance Protein A Measurement for the Detection of Viral Infection at the Pediatric Emergency Department
Quantitative point-of-care blood myxovirus resistance protein A measurement had an acceptable analytical accuracy compared to the enzyme immunoassay analysis. It differentiated viral from bacterial infections in febrile children with 92% sensitivity and 91% specificity.
The Impact of Zika Emergence in Remote Communities in Northwestern Ecuador
Zika virus seroprevalence was high in rural and remote Ecuadorian communities in 2018. Seroprevalence declined from 2018 to 2019, indicating substantial rural transmission during the 2015–2016 epidemic and underscoring the need for rural health system preparedness and vaccine efforts.
High Seroreactivities to Orthoebolaviruses in Rural Cameroon: A Case-Control Study on Nonhuman Primate Bites and a Cross-sectional Survey in Rural Populations
Impact of Human Leukocyte Antigen Allele–Killer Cell Immunoglobulin-like Receptor Partners on Sexually Transmitted Human Immunodeficiency Virus Type 1 Infection
HLA-I/KIR genotypes impact HIV-1 progression, but their role in primary infection is debated. A new genome-wide association study shows no role in sexual transmission susceptibility. The genetic basis of HIV-1 progression differs from resistance, presenting a paradox worth exploring.
COVID-2019 Disease Pathogenesis
Association of Pneumococcal Conjugate Vaccination With Severe Acute Respiratory Syndrome Coronavirus 2 Infection Among Older Adult Recipients of Coronavirus Disease 2019 Vaccines: A Longitudinal Cohort Study
Validation of Lung Ultrasound for Coronavirus Disease 2019 Prognostication in an International Multicenter Cohort Study
Lung ultrasound findings were predictive of worsening acute COVID-19 in an international multicenter cohort. Previously derived ultrasound prediction models were evaluated and validated across diverse clinical settings in the United States and at a remote hospital in Uganda.
Bacterial Disease Pathogenesis
Risk Factors for Recurrent Urinary Tract Infections Among Women in a Large Integrated Health Care Organization in the United States
Recurrent urinary tract infections occurred commonly in a large cohort of women and were associated with ages 18 to 27 or ≥78 years, comorbidities, history of frequent health care utilization and antibiotic prescriptions, and antibiotic-resistant urine pathogens.
Cytokine Biomarkers of Exacerbations in Sputum From Patients With Chronic Obstructive Pulmonary Disease: A Prospective Cohort Study
Measuring 30 cytokines in 936 sputum samples from patients with chronic obstructive pulmonary disease, we observed significant increases (IL-17A, TNF-α, IL-1β, IL-10) between stable and exacerbation states. We also identified a combination of cytokines (IL-1α, IL-1β, or TNF-α) as suitable biomarkers for bacteria-associated exacerbations.
Prevalence of Cefixime-Resistant Neisseria gonorrhoeae in Melbourne, Australia, 2021–2022
The prevalence of cefixime-resistant Neisseria gonorrhoeae among sexually active individuals in Melbourne exceeds the threshold of the 5% resistance level recommended by the World Health Organization. Thus, cefixime treatment would have limited benefits in Australia.
Triggering Toll-Like Receptor 5 Signaling During Pneumococcal Superinfection Prevents the Selection of Antibiotic Resistance
Boosting of airway Toll-like receptor 5 signaling by intranasal flagellin enhances amoxicillin efficacy against pneumococcal pneumonia, enables 200-fold antibiotic dose reduction, and curbs resistance selection. Moreover, mathematical modeling predicts 20-fold immune enhancement, further highlighting flagellin's use in advanced treatment strategies.
Whole-Genome Sequencing of Invasive Neonatal Escherichia coli From Uppsala County, Sweden
In this study, associations between virulence factors and phylogeny in neonatal E. coli bloodstream infections were investigated. Also, a newly created virulence database was introduced. Phylogroup B2 and colibactin were linked to mortality and severe outcomes, with sex-based differences observed.
Osteopontin Depletion in Nonhematopoietic Cells Improves Outcomes in Septic Mice by Enhancing Antimicrobial Peptide Production
Opn depletion in nonhematopoietic cells but not hematopoietic cells contributes to improved sepsis outcomes. Knockdown of Opn effectively reduced bacterial loads in the gut by increasing the expression of antimicrobial peptides through the AKT-FOXO3a signaling pathway.
Global Health
Estimating the Impact of Tuberculosis Pathways on Transmission—What Is the Gap Left by Passive Case Finding?
Recognition of the variety of disease pathways experienced by individuals with tuberculosis highlights how many are not served by the current passive case-finding system and how much transmission is missed, including transmission from subclinical disease.
Redox Biomarkers in Asymptomatic Latent Human Tuberculosis: A Comparison With Active Disease
This study highlights the key role of the GSH/GPX4/HO-1 axis in subjects with active M. tuberculosis infection compared to those with latent infection and provides additional tools to understand the redox background in asymptomatic and active disease.
New Window Into Hepatitis B in Africa: Liver Sampling Combined With Single-Cell Omics Enables Deep and Longitudinal Assessment of Intrahepatic Immunity in Zambia
Liver fine-needle aspiration biopsy, analyzed via single-cell RNA sequencing, proved safe and acceptable, including when performed longitudinally, among participants in an HBV cohort in Zambia, offering a promising method to study HBV immunopathogenesis, including in low- and middle-income countries.
Shigella and Enterotoxigenic Escherichia coli Have Replaced Rotavirus as Main Causes of Childhood Diarrhea in Rwanda After 10 Years of Rotavirus Vaccination
Rotavirus remains a significant cause of diarrhea among children in Rwanda but with a 10-fold lower odds ratio as compared with the period before introduction of rotavirus vaccination and with shifting genotypes.