Volume 5, 2024
Editorial
Editorial: thematic issue on modulating the environment with microbes
The significance of heme to Enterococcus faecalis is reviewed while also identifying the prevalence of hemoproteins throughout the enterococci and highlighting gaps in knowledge in enterococcal mechanisms of heme homeostasis.
Commentary
Pandemic storytelling and student engagement: how students imagined pandemics before COVID-19 pandemic
Microbes & Disease
Short-term pectin-enriched smoothie consumption has beneficial effects on the gut microbiota of low-fiber consumers
The role of proteinaceous toxins secreted by Staphylococcus aureus in interbacterial competition
A review on antibacterial proteins and peptides secreted by Staphylococcus aureus that are used to kill competing bacteria.
The gut metagenome harbors metabolic and antibiotic resistance signatures of moderate-to-severe asthma
One sentence summary: Fecal microbiota of patients with moderate-to-severe asthma contain markers of heightened antibiotic resistance and long-chain fatty acid metabolism compared to healthy controls.
Interactions between commensal Enterococcus faecium and Enterococcus lactis and clinical isolates of Enterococcus faecium
Virulence characteristics of Gram-positive bacteria isolated from diabetic foot ulcers
Characterization of bacterial strains that reside in diabetic wound infections and evidence of bacterial cooperation during infection.
Colonization of vancomycin-resistant Enterococcus faecium in human-derived colonic epithelium: unraveling the transcriptional dynamics of host–enterococcal interactions
Interaction of Enterococcus faecium with human-derived colonic epithelium revealed an elaborate and diverse bacterial response.
Activity-based protein profiling of serine hydrolases and penicillin-binding proteins in Enterococcus faecium
Using a chemical proteomics approach we compared enzyme activity profiles across different Enterococcus faecium strains and growth conditions and identified 11 largely uncharacterized enzymes.
Heme utilization by the enterococci
The significance of heme to Enterococcus faecalis is reviewed while also identifying the prevalence of hemoproteins throughout the enterococci and highlighting gaps in knowledge in enterococcal mechanisms of heme homeostasis.
Enterococcal quorum-controlled protease alters phage infection
Enterococcal-host interactions in the gastrointestinal tract and beyond
Enterococci, typical gut commensals, can also inhabit extra-intestinal sites. Their metabolic and genetic flexibility helps them adapt to harsh environments while modulating host responses, thus allowing them to thrive outside their natural niche.
Contact with young children is a major risk factor for pneumococcal colonization in older adults
With important questions remaining about the sources of transmission of pneumococcus to community-dwelling older adults, we identified contact with young children as the most important factor influencing acquisition of pneumococcus.
Trivalent immunization with metal-binding proteins confers protection against enterococci in a mouse infection model
In this study, we demonstrated that active immunization with a trivalent vaccine composed of metal-binding lipoproteins provides strong protection against enterococcal infections in a mouse model.
Microbes & Environment
Genomes of nine biofilm-forming filamentous strains of Cyanobacteria (genera Jaaginema, Scytonema, and Karukerafilum gen. nov.) isolated from mangrove habitats of Guadeloupe (Lesser Antilles)
Functional guilds and drivers of diversity in seaweed-associated bacteria
Functional diversity in seaweed-associated bacteria is characterised by taxonomy, carbohydrate metabolism, and functional guilds.
Antibacterial activity of solid surfaces is critically dependent on relative humidity, inoculum volume, and organic soiling
Antibacterial activity of copper and silver surfaces is highly dependent on environmental testing conditions with maximum efficiency in low-organic wet conditions to no antibacterial activity in high-organic dry conditions indicating the need to test antimicrobial surface materials in application-relevant test formats as opposed to current standards.
Effects of biocontrol Bacillus sp. strain D5 on the pathogenic Fusarium oxysporum R1 at the microscopic and molecular level in Crocus sativus L. (saffron) corm
A targeted approach to enrich host-associated bacteria for metagenomic sequencing
Insights into freshwater ciliate diversity through high throughput DNA metabarcoding
Prevalence of diverse antimicrobial resistance genes and bacteria in sewage treatment plant-derived sludge environment
STP sludge study reveals diverse drug-resistant bacteria harboring ARGs, stressing screening to curb AMR and environmental risks.
Novel strains of Actinobacteria associated with neotropical social wasps (Vespidae; Polistinae, Epiponini) with antimicrobial potential for natural product discovery
Mining the microbiome of Lake Afdera to gain insights into microbial diversity and biosynthetic potential
Fungal endophytes from saline-adapted shrubs induce salinity stress tolerance in tomato seedlings
Shrubs along the shores of saline alkaline lakes are a novel source of endophytic fungi for use in sustainable agriculture.
Atmospheric dispersal shapes rapid bacterial colonization of Icelandic Lava Rocks
The impact of atmospheric deposition on bacterial community formation remains poorly understood. This study reports that atmospheric dispersal plays a crucial role in colonizing volcanic rocks, leading to the rapid formation of unique and diverse communities within just one year.
Size fractionation informs microbial community composition and interactions in the eastern tropical North Pacific Ocean
Large-volume size-fractioned filtration informs prokaryotic community composition and interactions between prokaryotes and marine fungi in the eastern tropical North Pacific Ocean oxygen minimum zone.
Gut microbiome in two high-altitude bird populations showed heterogeneity in sex and life stage
Using 16s rRNA characterize the gut microbiome community in two plover species in high-altitude population to show difference on sex and ages.
Microbes & Metabolism
YajC, a predicted membrane protein, promotes Enterococcus faecium biofilm formation in vitro and in a rat endocarditis model
YajC, a predicted membrane protein, plays a role in biofilm formation of the clinically relevant Enterococcus faecium and is potentially an interesting drug target.
The role of the universal sugar transport system components PtsI (EI) and PtsH (HPr) in Enterococcus faecium
The universal sugar transport system (PtsIH) in E. faecium plays a major role in carbohydrate metabolism and competitive fitness as well as biofilm formation.
Arginine impacts aggregation, biofilm formation, and antibiotic susceptibility in Enterococcus faecalis
In this study, we demonstrated that active immunization with a trivalent vaccine composed of metal-binding lipoproteins provides strong protection against enterococcal infections in a mouse model.
Evaluating the impact of redox potential on the growth capacity of anaerobic gut fungi
Anaerobic gut fungi can grow at redox potential values higher than that encountered in their natural habitats.
Microbes & Multicellular Life
Culex pipiens and Culex restuans larval interactions shape the bacterial communities in container aquatic habitats
One-sentence summary: This study demonstrates that interactions among larvae of two Culex mosquitoes strongly impact the composition of bacteria in container aquatic habitats and mosquito bodies.
The gut microbiome of farmed Arctic char (Salvelinus alpinus) is shaped by feeding stage and nutrient presence
Community context influences the conjugation efficiency of Escherichia coli
Our study unveils the community impact on the conjugation efficiency of uropathogenic E. coli isolates, with Gram-positive species, particularly enterococci, enhancing the conjugation efficiency.
Characterization of the metabolism of the yeast Yarrowia lipolytica growing as a biofilm
Yarrowia lipolytica, known for its metabolic flexibility, forms various products from diverse carbon sources and transitions adeptly between planktonic and biofilm growth. This study examines its biofilm metabolic activities, suggesting potential for continuous bioprocessing.
Microbes & Society
Comparative assessment of Nanotrap and polyethylene glycol-based virus concentration in wastewater samples
Assessment on the feasibility of a novel, magnetic bead-based extraction of viruses from wastewater for quantitative (PCR-based) and qualitative (sequencing-based) analyses.
Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization
Thrity-seven E. coli were isolated form marine sediment. Antibiotic resistance, biofilm formation capacity and growth in LB and LB with increased NaCl concentration were evaluated. Whole genome sequences of isolates were used for source tracking and the indentification of antibiotic resistance and virulence genes.
Exploring near-infrared spectroscopy and hyperspectral imaging as novel characterization methods for anaerobic gut fungi
Near-infrared spectroscopy and hyper-spectral imaging are explored as novel methods for characterization of anaerobic gut fungi strains, independent of molecular approaches.