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Patrick M. Boyle, Sohail Zahid, Natalia A. Trayanova, Towards personalized computational modelling of the fibrotic substrate for atrial arrhythmia, EP Europace, Volume 18, Issue suppl_4, December 2016, Pages iv136–iv145, https://doi.org/10.1093/europace/euw358
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Atrial arrhythmias involving a fibrotic substrate are an important cause of morbidity and mortality. In many cases, effective treatment of such rhythm disorders is severely hindered by a lack of mechanistic understanding relating features of fibrotic remodelling to dynamics of re-entrant arrhythmia. With the advent of clinical imaging modalities capable of resolving the unique fibrosis spatial pattern present in the atria of each individual patient, a promising new research trajectory has emerged in which personalized computational models are used to analyse mechanistic underpinnings of arrhythmia dynamics based on the distribution of fibrotic tissue. In this review, we first present findings that have yielded a robust and detailed biophysical representation of fibrotic substrate electrophysiological properties. Then, we summarize the results of several recent investigations seeking to use organ-scale models of the fibrotic human atria to derive new insights on mechanisms of arrhythmia perpetuation and to develop novel strategies for model-assisted individualized planning of catheter ablation procedures for atrial arrhythmias.
Introduction
Atrial arrhythmias that involve fibrotic substrates are increasingly prevalent and extremely difficult to treat. Atrial fibrillation (AF) is the most common cardiac arrhythmia and a major contributor to mortality and morbidity. One to two percent of individuals worldwide currently suffer from AF1 and its prevalence is expected to increase 2.5-fold in the next 40 years.2 Over the past decade, catheter ablation has emerged as a potential approach to treat AF. However, in the subset of patients with persistent AF (PsAF), who have extensive atrial fibrotic remodelling,3–5 the success rate of catheter ablation is extremely low (∼50%)6 and the process involves procedures that are tedious and time-consuming. Moreover, even in AF patients in whom ablation procedures are initially successful, post-procedure arrhythmias are common, with left atrial flutter (LAFL) occurring in up to 31% of cases.7,8 The re-entrant circuit in these cases is often located in fibrotic tissue of the LA,9 requiring subsequent ablation procedures that are technically challenging and non-systematic.10–12
As such, there is an urgent need to develop new approaches for the treatment of complex atrial arrhythmias that incorporate understanding of contributions from the fibrotic remodelled tissue and are tailored to the individual patient. Given that late gadolinium-enhanced magnetic resonance imaging (LGE-MRI) can now be used to reconstruct each patient’s unique fibrotic substrate,13–15 the ultimate hope is that information extracted from such scans can be leveraged to guide powerful new ablation approaches that are custom-tailored to render the initiation and perpetuation of atrial re-entry in the given patient impossible. However, attempts to put this into practice have been greatly hindered by a dearth of understanding regarding how each individual’s specific distribution of fibrotic tissue affects arrhythmia dynamics. This review summarizes findings from a major recent research thrust that seeks to address this knowledge gap by using patient-derived LGE-MRI-based computational models of the fibrotic atria to develop novel mechanistic insights and ablation strategies relevant to personalized treatment of atrial arrhythmias.
Modelling the fibrotic substrate for atrial arrhythmias
In an attempt to elucidate the mechanisms in the fibrotic substrate leading to altered conduction and those responsible for the re-entrant drivers and organization of atrial arrhythmias, early models of the fibrotic atria accounted for different aspects of fibrotic remodelling in a variety of ways. The simplest model representation of atrial structural remodelling was based on the assumption that gap junction remodelling (C×43 down-regulation, hypophosphorylation, and lateralization of connexin-43 [C×43]) occurs throughout the atria in a uniform fashion. Two such studies were conducted: one assumed that the coupling strength between computational cells was decreased (Cx43 down-regulation, hypophosphorylation only),16 while the other modelled increased anisotropy throughout the LA (representing both aspects of Cx43 remodelling).17 The first simulation study16 showed that decreasing the coupling between cells slowed conduction and decreased the wavelength, further perpetuating AF. The second study17 demonstrated that increased anisotropy throughout the fibrotic human LA was an additional mechanism for the breakup of ectopic waves emanating from the pulmonary veins (PVs) into multiple re-entrant circuits; higher anisotropy ratios resulted in sustained re-entrant activity even though the ectopic focus was no longer present. Similar conclusions were obtained from a human atrial model18 where the locations of the fibrotic (i.e., high-anisotropy-ratio) regions were implemented from patient MRI-LGE scans.

Wavefront propagation in 2D atrial tissue models with fibrosis patterns derived from AF patient LGE-MRI. (A–E) For models derived from scans of Utah III (top) and Utah IV (bottom) patients: fibrosis patterns, with brighter voxel intensity indicating higher LGE (A); activation times in response to pacing at left edge of model (B); bipolar electrogram signals recorded from a location 1 mm above the centre of each model (C), along with accompanied by maps of electrogram amplitude (D) and extrema count (E). (F) Panels 1–7 show activation times in a model based on scans from a Utah III patient in response to seven consecutive stimuli (same pacing electrode and colour scale as (B)). Panels 8–9 illustrate initiation of reentry due to propagation near the percolation threshold within the fibrotic tissue region. With permission from Vigmond et al.28
Atrial models incorporating transverse collagen deposition24–26 (as in reparative fibrosis) have highlighted the significant interruption and disarray in atrial conduction patterns caused by it. Importantly, collagen deposition rather than C×43 remodelling was found to be the major factor in atrial conduction disturbances under heart failure conditions.25 Furthermore, it was established that not only the total amount, but also the specific spatial distribution of collagen deposition (e.g., as generated by a stochastic algorithm) governed the occurrences of conduction block.26 To evaluate the consequences of structural remodelling on AF dynamics in the posterior left atrium (LA), Tanaka et al.24 used 2D models of transmural posterior LA sections generated from histological data; patchy distributions of collagen were also reconstructed from those data. Simulations demonstrated that whether the mechanism sustaining AF was re-entrant or focal, fibrous patches of large size were the major factor responsible for the different dynamics of AF waves in remodelled vs. control hearts; they anchored re-entrant circuits and impaired wave propagation to generate delays and signal fractionation.
Computational modelling has also been used to improve understanding of complex inherited arrhythmia-causing diseases in which a genetic mutation causes changes in both cellular electrophysiology and structural remodelling. Wolf et al.29 explored mechanisms of AF perpetuation in individuals with Ankyrin-B dysfunction by conducting simulations in 2D models of atrial tissue incorporating consequences of the disease at both the cell scale (abbreviated action potential duration [APD] due to defective membrane targeting of ICaL) and the tissue scale (conduction slowing due to increased fibroblast proliferation and collagen deposition). In models including either diffuse or clustered regions of fibrotic remodelling, the authors observed shorter functional lines of conduction block and a complex relationship between the duration of induced re-entry and the size of the simulated tissue, with a high incidence of re-entry-terminating conduction block in both small (≤7 cm2) and large (≥12 cm2) rectangular domains; the spatial pattern of fibrosis (i.e., diffuse vs. clustered) did not affect these results. When the same simulations were repeated with cell-level effects of Ankyrin-B only (i.e., in the absence of fibrosis), this behaviour was eliminated, suggesting that tissue-scale fibrotic remodelling may be the primary underlying source of complex arrhythmia dynamics in patients with the corresponding inherited disease. Importantly, the authors also presented results suggesting a similar multi-scale mechanism explains aberrant sinoatrial node behaviour in the same cohort.
A third component of fibrotic remodelling, fibroblast proliferation, and phenotype switching has also been represented in computational models of the atria. This is particularly relevant in view of the fact that fibroblasts, in addition to being part of the structural remodelling of the atria, could potentially also exert electrophysiological influences on neighbouring myocytes, either through electrical coupling30 or via paracrine effects.31 The first study to explicitly incorporate fibroblast presence as a representation of fibrotic remodelling was the 2D atrial model by Ashihara et al.32 Within the fibrotic region, coupling of fibroblasts (kinetics governed by a fibroblast ionic model) to atrial myocytes caused shorter APD, slower conduction, and lower excitability as well as spiral wave breakups. This effect was exacerbated when fibroblast density increased. Interestingly, when fibroblasts were substituted by collagen in the model, wave breakups were not observed. It needs to be noted, however, that the role of myofibroblasts in altering action potential dynamics via gap-junction coupling remains controversial.
Finally, a new research thrust has focused on the investigation of differences in prevalence of perimysial fibrosis (i.e., clefts between bundles of myocytes) and endomysial fibrosis (i.e., clefts between myocytes within bundles) between different stages of progressive AF. Using an experimental goat model, Verheule et al.33 showed that endomysial remodelling was more severe in animals with long-term AF (LT, 6 months) than in those with short-term AF (ST, 3 weeks); these two animal models are roughly analogous to permanent and persistent AF in humans, respectively. Interestingly, no significant difference in perimysial fibrosis was observed between LT and ST groups. Excess sub-epicardial endomysial fibrosis had prominent effects on atrial electrophysiology in LT goats, including significantly reduced wave size and increased anisotropy. When the authors incorporated these features in a computational model with 2D epicardial and endocardial layers coupled by discrete transmural bundles, they observed that the LT variant had more distinct waves and more epicardial breakthroughs in each AF cycle. The resulting loss of synchronization was consistent with experimental observations, providing a plausible explanation for differences in arrhythmia characteristics between persistent and permanent AF patients.
The advances in understanding of the fibrotic substrate described in the section above are all important building blocks in the construction of patient-derived organ-scale atrial models, which are the focus of the remainder of this review. For a detailed comparison of the different methodologies employed to model the fibrotic substrate, the reader is referred to the article by Roney et al.34 in this supplement.
Image-based 3D modelling of the fibrotic left atrium
The first three major elements of fibrotic remodelling discussed in the preceding (gap-junction remodelling, collagen deposition, and myofibroblast proliferation), were combined together by McDowell et al.35,36 in an 3D LA model reconstructed from MRI-LGE scans of a patient with permanent AF. This model was the first to accurately capture not only the 3D patient-specific atrial geometry, but also each individual’s distribution of fibrotic lesions in the atria. Electrophysiological remodelling associated with persistent AF was also incorporated.37,38 The model was used to examine the mechanisms for AF initiation by PV ectopic stimulation. The study found that for fibrotic lesions typical of human remodelled atria under the conditions of persistent AF, gap junction remodelling in the fibrotic lesions was a necessary but not sufficient condition for the development of AF following a PV ectopic beat. The sufficient condition was myofibroblast proliferation in these lesions, where myofibroblasts exerted either electrotonic or paracrine influences on myocytes within the lesions. Deposition of collagen in the lesions exacerbated the myofibroblasts’ paracrine or electrotonic effects by additionally shortening regional APD.

Effect of ablating tissue enclosing organizing centres of reentry in patient-specific left atrial models. (A) For a Utah III patient, sequential maps of transmembrane voltage (Vm) illustrate the response to ectopic pacing from the left pulmonary veins, before (top) and after (bottom) the simulation of ablation lesions, as described in the text. (B) Same as (A) but for a Utah IV patient. With permission from McDowell et al.39
While the studies discussed in this section established the basic elements for image-based modelling of electrophysiology in the fibrotic atria and yielded important mechanistic insights regarding the initiation, perpetuation, and termination of AF, they focused exclusively on simulations of the LA. Given the fact that AF-perpetuating re-entrant sources have also been found to localize in the right atrium41 and have even been directly targeted for catheter ablation,42 a major priority for the next generation of patient-specific simulations (as discussed in the following sections) was the development of models representing both the right and left atria.
Fibrotic determinants of re-entrant driver localization
The first computational assessment of the relationship between fibrosis and re-entrant driver dynamics was conducted in a 3D anatomical model of the human atria originally derived by Harrild and Henriquez from CAD drawings.43 Krogh-Madsen et al.16 examined the behaviour of AF-perpetuating re-entrant sources in the presence of structural fibrotic remodelling with or without cell-scale electrophysiology remodelling. The effect of fibrosis was represented by uniformly decreasing conductivity throughout the atria by up to 50%, resulting in a ∼40% increase in the time required for full atrial activation in response to sinus pacing; cell-scale remodelling was represented by modifying key ionic currents as in previous studies,37 resulting in a ∼20% decrease in APD. As discussed in the previous section, both types of remodelling decreased cardiac wavelength, which is the product of APD and conduction velocity. When re-entry was initiated via a cross-shock protocol, the authors found that both arrhythmia duration and the maximal number of simultaneously occurring filaments (i.e., number of concomitant re-entrant drivers) was shown to be inversely proportional to wavelength. Interestingly, in simulations conducted with either cellular remodelling only or fibrotic remodelling only, the authors exclusively observed arrhythmia perpetuated by macroscopic anatomical re-entry (e.g., wavefront propagation around the pulmonary veins, inferior/superior vena cava, or tricuspid annulus), which is more characteristic of atrial flutter than AF. In contrast, when both types of remodelling were included, numerous episodes of arrhythmia driven by ‘un-anchored’ re-entrant drivers in the left or right atrial walls were observed. Thus, this study produced the crucial insight that computer models must incorporate changes due to both cell-scale electrophysiological remodelling and fibrotic in order to facilitate the simulated induction of AF-like arrhythmias. However, the important question of the exact relationship between the spatial pattern of fibrotic tissue and AF re-entrant dynamics remained unanswered.
More recently, studies44,45 on fibrosis and AF have focused on addressing that gap in the literature by using 3D bi-atrial patient- specific models incorporating the individual’s unique fibrotic distribution. A question of particular importance is how the specific fibrotic distribution in each heart impacts the locations of AF-perpetuating re-entrant drivers. These studies used a large number of patient-specific atrial models (n = 20) with individualized fibrosis distribution reconstructed from LGE-MRI. In addition to including action potential changes associated with persistent AF, fibrotic regions were represented with remodelled electrophysiology, anisotropy, and conduction properties, but without representing explicitly any electrophysiological effects associated with the controversial myocyte-fibroblast coupling. Instead, ionic current modifications were implemented consistent with electrophysiological changes that atrial myocytes undergo when subjected to elevated levels of transforming growth factor β1 (TGF-β1), a key component of the fibrogenic signalling pathway.46,47 Conductivity values and anisotropy ratios in fibrotic regions reflected decreased intercellular coupling due to replacement fibrosis, collagen deposition (interstitial fibrosis), and gap junction remodelling.25,48 In this manner, the representation of fibrotic remodelling not only better reflected new experimental data, but also ensured computational tractability of studies involving a large number of patient-specific atrial models.

Relationship between reentrant driver localization and fibrosis spatial pattern in patient-specific models of persistent AF. (A) Map showing activation times with respect to reference time (tref) for a reentrant driver near the inferior vena cava. Inset panels: maps of transmembrane voltage (Vm). Reentrant driver-associated phase singularities are marked by magenta spheres. (B) Phase singularity trajectory over time superimposed on activation map with fibrosis spatial pattern (green). (C) Distribution of fibrotic tissue (green) for a different patient-specific atrial model than in panels (A) and (B). Inset panels: maps of FD and FE metrics (see text) used to quantitatively characterize fibrosis spatial pattern, with fibrotic tissue boundaries and phase singularity trajectories shown as in (A). Asterisk: region with high FD, low FE. (D) Time series plots of FD and FE at phase singularity locations for the case shown in (C); values range from 0.45–0.8. With permission from Zahid et al.44

Quantitative characteristics of fibrosis spatial pattern in atrial regions that harbour reentrant drivers of persistent AF. (A) 2D histogram showing the values of fibrosis density and entropy (FD and FE) metrics at locations of phase singularities associated with reentrant drivers induced by rapid pacing in 13 patient-specific models. 1D histograms of FD (above) and FE (right) values are also shown. Boxed region: values within one standard deviation of mean FD and FE values (0.37 ≤ FE ≤ 0.65; 0.46 ≤ FD ≤ 0.80). (B) Same as (A) but for locations where phase singularities were never observed. Boxed region: 0 ≤ FE ≤ 0.40; 0 ≤ FD ≤ 0.32. (C) Locations of all reentrant driver-associated phase singularities for a particular patient-derived atrial model overlaid on map showing distribution of tissue regions with the fibrosis spatial pattern identified by machine learning (see text) as favourable to the initiation and perpetuation of reentrant arrhythmia (green). (D) Maps of reentrant driver-associated phase singularity frequency obtained via ECGI during persistent AF episodes in two patients. Regions classified as favourable to reentrant driver localization by machine learning (i.e., same as green regions in (C)) are overlaid with a black crosshatched pattern. With permission from Zahid et al.44
Based on the findings described above, a follow-up simulation study45 examined whether the prevalence of regions with an intermingling of fibrotic and non-fibrotic tissue correlates with the inducibility of AF. If so, could this metric serve as a better predictor of AF inducibility than total atrial fibrosis burden? The latter quantity (total fibrosis burden; FB) has been previously linked to higher risk of persistent AF.49 Using the same set of patient-specific models described above, the prevalence of regions with highly intermingled fibrotic and non-fibrotic tissue in each case was assessed by median and upper quartile values of each unique FD metric distribution (FD50 and FD75, respectively). Simulations demonstrated that atrial models in which rapid pacing did not induce AF had low both FB (≤ 11%) and FD75 (≤ 0.1) values. In AF-inducible models, higher inducibility was associated with increased FB and D75. Inducibility was correlated both with FB and with FDm, a linear combination of FD50 and FD75. Statistical analysis demonstrated that FDm had a higher predictive power than FB. This simulation study demonstrated that fibrosis spatial pattern analysis could be a novel avenue for persistent AF risk stratification. This is particularly noteworthy in light of recent clinical findings that showed a lack of association between the regional or global extent of LGE areas and AF-perpetuating re-entrant drivers,50 suggesting that more robust quantitative metrics (such as FDm or local maps of FD and FE, as discussed above44) could provide a better indication of the spatial localization of re-entrant drivers in the fibrotic atria.
Model-based prediction of optimal ablation strategies

Simulations in patient-specific atrial models reconstructed from LGE-MRI can be used to predict optimal ablation targets for LAFL. (A–D) For four patients in the LAFL cohort, “minimum cut” ablations in the atrial model (left) are compared to lesions that were applied during successful clinical ablation procedures (right). Matching lesions are indicated with yellow arrows. With permission from Zahid et al.51
Importantly, the resulting MC-based targets, which in each case encompass the minimum volume of ablated tissue necessary to abolish LAFL inducibility in silico, were similar location but smaller than clinical ablation lesions that successfully terminated LAFL in the corresponding patients (2.8 ± 1.5 cm vs. 4.8 ± 1.7 cm, P < 0.05). As such, this study provided important proof of concept for the use of simulations conducted pre-procedure in patient-specific models derived from clinical LGE-MRI scans to successfully plan clinical ablation procedures.
Another recent study by Bayer et al.53 used a bi-layer computational model of the LA incorporating fibrotic remodelling using a probabilistic approach based on LGE-MRI data from PsAF patients (the same methodology described by Vigmond et al.28) to explore the relative efficacy of three different strategies for radio-frequency ablation. The first approach tested was pulmonary vein isolation (PVI) with additional lesions along the LA roof and connecting to the mitral annulus; this was found to be ineffective except in cases where re-entrant drivers happened to be initiated in locations near the PVs. The second strategy was the execution of ablation lesions of different shapes (circles, perforated circles, lines, crosses) and sizes (0.5–1.5 cm) at sites where density of AF-perpetuating organizing centres (i.e., phase singularities—PSs) was high. In contrast to PVI plus lines, this approach proved highly effective, especially when the largest (1.5 cm) perforated circle-shaped lesions were used (positive correlation between successful lesion locations and PS density: r > 0.75, P < 0.05). Finally, the authors tested the efficacy of a novel approach based on executing ablation lines that streamlined the left atrial activation sequence observed during sinus rhythm. For n = 5–8 evenly spaced lines, this strategy was very effective, resulting in immediate AF termination in all cases. Although these results are compelling, suggesting the theoretical existence of a ‘one size fits all’ approach for persistent AF ablation, the authors correctly note that the translation of the streamlining ablation approach to clinical application would be a tremendous technical challenge.
Concluding remarks
As this review demonstrates, recent studies have leveraged personalized computer models of the atria to elucidate the mechanisms of arrhythmia initiation, perpetuation, and termination in the fibrotic substrate. Notably, this research thrust has been paralleled by similar efforts to develop and utilize patient-specific models of ventricular arrhythmias that involve structural and fibrotic remodelling.54,55 This includes studies aiming to estimate ablation targets for scar-related ventricular tachycardia56 and stratify risk of lethal arrhythmias in post-myocardial infarction patients, including individuals for whom insertion of implantable defibrillators is clinically indicated57 and (as discussed elsewhere in this supplement) those for whom it is not.58
Furthermore, the field has now progressed to an exciting stage where computer modellers and clinicians are on the precipice of a truly thrilling collaboration that will involve the execution of catheter ablations in patients based on optimal treatment plans derived from pre-procedure simulations that take into account each individual’s unique pattern of fibrotic structural remodelling. As this fascinating research trajectory continues to be explored in the future, the usefulness of its findings will depend on continuous adaptation and integration of new elements, including model redesign and evaluation, improvements in the execution time of biophysically detailed atrial models, implementation of consistent strategies for comparison with experimental and clinical measurements, and investment in efforts to ensure repeatability and consistency of simulation results.
Funding
This work was supported by American Heart Association 16-SDG-30440006 (to P.M.B.); by an NSF Graduate Research Fellowship and an ARCS Foundation Award (to S.Z.); and by the Johns Hopkins Medicine Discovery Fund, NIH DP1-HL123271, and NSF CDI 1124804 (to N.A.T.).
Conflict of interest: none declared.
References