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Journal Article
ACCEPTED MANUSCRIPT
Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria
DNA Research, dsaf009, https://doi.org/10.1093/dnares/dsaf009
Published: 24 April 2025
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The Phyllanthus emblica cultivar ‘Yingyu’. A) Long shedding branch...
Published: 12 March 2025
Fig. 1.
The Phyllanthus emblica cultivar ‘Yingyu’. A) Long shedding branches and leaves. B) Fruits. C) Inflorescences, male, and female flowers.
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Genome annotation analysis pipeline of Phyllanthus emblica cultiva...
Published: 12 March 2025
Fig. 3.
Genome annotation analysis pipeline of Phyllanthus emblica cultivar ‘Yingyu’.
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Genome size estimation for Phyllanthus emblica cultivar ‘Yingyu’ w...
Published: 12 March 2025
Fig. 4.
Genome size estimation for Phyllanthus emblica cultivar ‘Yingyu’ with the distribution of the number of distinct k-mers ( k = 21) with the given multiplicity values.
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Phyllanthus emblica L. cultivar ‘Yingyu’ genome-wide all-by-all Hi...
Published: 12 March 2025
Fig. 6.
Phyllanthus emblica L. cultivar ‘Yingyu’ genome-wide all-by-all Hi–C interaction heat map.
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Annotation of gene function in Phyllanthus emblica L. cultivar ‘Yi...
Published: 12 March 2025
Fig. 8.
Annotation of gene function in Phyllanthus emblica L. cultivar ‘Yingyu’. A) Venn diagram depicting the annotated gene functions built using the NR, InterPro, KEGG, SwissProt, and KOG databases; B) Annotated gene functions in KEGG pathway; C) The gene annotation among different databases.
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PCA analysis of the gene expression levels in different tissues of Phyl...
Published: 12 March 2025
Fig. 11.
PCA analysis of the gene expression levels in different tissues of Phyllanthus emblica L. cultivar ‘Yingyu’.
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De novo genome assembly pipeline of Phyllanthus emblica c...
Published: 12 March 2025
Fig. 2.
De novo genome assembly pipeline of Phyllanthus emblica cultivar ‘Yingyu’.
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The divergence time and evolutionary scenario of Phyllanthus emblica...
Published: 12 March 2025
Fig. 10.
The divergence time and evolutionary scenario of Phyllanthus emblica . A) The divergence time tree of the 13 species was inferred from the complete data set of single-copy homologous genes. The number at each node indicates the divergence time of each species (in millions of years). B) Dot plot ill
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Specifically expressed genes in different tissues of Phyllanthus emblic...
Published: 12 March 2025
Fig. 12.
Specifically expressed genes in different tissues of Phyllanthus emblica L. A) Shedding branches; B) One-year-old branches; C) Flowers; D) Fruits (flesh); E) Young leaves.
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The ascorbate biosynthesis-related gene expression level in different tissu...
Published: 12 March 2025
Fig. 13.
The ascorbate biosynthesis-related gene expression level in different tissue of Phyllanthus emblica L. cultivar ‘Yingyu’. S, shedding branches; B, one-year branches; Fl, flowers; Fr, fruits(flesh); L, leaves.
Journal Article
Chromosome-scale genome assembly of Phyllanthus emblica L. ‘Yingyu’
DNA Research, Volume 32, Issue 2, April 2025, dsaf006, https://doi.org/10.1093/dnares/dsaf006
Published: 12 March 2025
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The flow cytometry and karyotype analysis of Phyllanthus emblica L...
Published: 12 March 2025
Fig. 5.
The flow cytometry and karyotype analysis of Phyllanthus emblica L. A) The flow cytometry analysis of the wild type ‘Yingyu’. B) The flow cytometry analysis of the cultivated type ‘Bingtian’. C) The karyotype analysis of the wild type ‘Yingyu’.
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Landscape of genomic features and genetic diversity of Phyllanthus embl...
Published: 12 March 2025
Fig. 7.
Landscape of genomic features and genetic diversity of Phyllanthus emblica . Circles represent, from innermost to outermost, A) sequencing gaps, B) GC content, and C) gene numbers.
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The ortholog genes and specific characteristics of gene families in Aqu...
Published: 12 March 2025
Fig. 9.
The ortholog genes and specific characteristics of gene families in Aquilgeia coerulea , Arabidopsis thaliana , Beta vulgaris , Coffea arabica , Helianthus annuus, Nelumbo nucifera, Oryza sativa, Papaver somniferum, Phyllanthus emblica, Ricinus communis, Solanum lycopersicum, Theobroma cacao a
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Feature of the P. lamellidens and C. japonicus genome ass...
Published: 01 March 2025
Fig. 3.
Feature of the P. lamellidens and C. japonicus genome assemblies. a, b) The genome size and the number of protein-coding genes of 9 ant species. The Plam indicates P. lamellidens . The Cjap indicates C. japonicus . c) Phylogenetic relationship among 9 ant species. The ultrafast bootstrap s
Journal Article
Genome assembly of the temporary socially parasitic spiny ant Polyrhachis lamellidens and its host Camponotus japonicus
DNA Research, Volume 32, Issue 2, April 2025, dsaf005, https://doi.org/10.1093/dnares/dsaf005
Published: 01 March 2025
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The pictures of ants. a) P. lamellidens (worker). b) P. lamell...
Published: 01 March 2025
Fig. 1.
The pictures of ants. a) P. lamellidens (worker). b) P. lamellidens (queen) and C. japonicus (host worker).
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Summary of the P. lamellidens and C. japonicus genome ass...
Published: 01 March 2025
Fig. 2.
Summary of the P. lamellidens and C. japonicus genome assemblies. a) P. lamellidens (worker). b, c) The contact map and snail plot of the P. lamellidens chromosomal genome assembly. The contact map shows the 21 superscaffolds corresponding to chromosomes, ordered from longest to shortest. d)
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Summary of CSPs in P. lamellidens and C. japonicus. a) Ph...
Published: 01 March 2025
Fig. 4.
Summary of CSPs in P. lamellidens and C. japonicus . a) Phylogenetic relationship of CSPs in C. japonicus and P. lamellidens . */* is SH-aLRT support/ultrafast bootstrap support. b) The heatmap of CSPs expression in P. lamellidens . TPM was converted to a Z score. The arrow heads indicate D
