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Section: Letter to the Editor
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Journal Article

Improving bioinformatics software quality through teamwork

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Katalin Ferenc and others
Bioinformatics, Volume 40, Issue 11, November 2024, btae632, https://doi.org/10.1093/bioinformatics/btae632
Published: 22 October 2024
Journal Article

Letter to the editor: Testing on external independent datasets is necessary to corroborate machine learning model improvement

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Giulia Ilaria Corsi and others
Bioinformatics, Volume 39, Issue 6, June 2023, btad327, https://doi.org/10.1093/bioinformatics/btad327
Published: 18 May 2023
Journal Article

Literature-based discovery: addressing the issue of the subpar evaluation methodology

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Erwan Moreau
Bioinformatics, Volume 39, Issue 2, February 2023, btad090, https://doi.org/10.1093/bioinformatics/btad090
Published: 14 February 2023
Journal Article

A closed formula relevant to ‘Theory of local k-mer selection with applications to long-read alignment’ by Jim Shaw and Yun William Yu

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John L Spouge
Bioinformatics, Volume 38, Issue 20, 15 October 2022, Pages 4848–4849, https://doi.org/10.1093/bioinformatics/btac604
Published: 05 September 2022
Journal Article

Srinivasan (1962–2021) in Bioinformatics and beyond

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M Michael Gromiha and others
Bioinformatics, Volume 38, Issue 8, March 2022, Pages 2377–2379, https://doi.org/10.1093/bioinformatics/btac054
Published: 03 February 2022
Journal Article

ELIXIR: providing a sustainable infrastructure for life science data at European scale

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Jennifer Harrow and others
Bioinformatics, Volume 37, Issue 16, August 2021, Pages 2506–2511, https://doi.org/10.1093/bioinformatics/btab481
Published: 27 June 2021
Journal Article

Calibrating variant-scoring methods for clinical decision making

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Silvia Benevenuta and others
Bioinformatics, Volume 36, Issue 24, December 2020, Pages 5709–5711, https://doi.org/10.1093/bioinformatics/btaa943
Published: 25 January 2021
Journal Article

Comment on ‘Hayai-Annotation Plants: an ultrafast and comprehensive functional gene annotation system in plants’: the importance of taking the GO graph structure into account

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Michiel Van Bel and Klaas Vandepoele
Bioinformatics, Volume 36, Issue 22-23, December 2020, Pages 5558–5560, https://doi.org/10.1093/bioinformatics/btaa1052
Published: 21 December 2020
Journal Article

HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

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René L Warren and Inanç Birol
Bioinformatics, Volume 36, Issue 21, November 2020, Pages 5271–5273, https://doi.org/10.1093/bioinformatics/btaa756
Published: 27 August 2020
Journal Article

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)

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Vasundra Touré and others
Bioinformatics, Volume 36, Issue 24, December 2020, Pages 5712–5718, https://doi.org/10.1093/bioinformatics/btaa622
Published: 08 July 2020
Journal Article

Reference bias in the Illumina Isaac aligner

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Alex J Cornish and others
Bioinformatics, Volume 36, Issue 17, September 2020, Pages 4671–4672, https://doi.org/10.1093/bioinformatics/btaa514
Published: 21 May 2020
Journal Article

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

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Rachel Drysdale and others
Bioinformatics, Volume 36, Issue 8, April 2020, Pages 2636–2642, https://doi.org/10.1093/bioinformatics/btz959
Published: 17 January 2020
Journal Article

On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models

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Miguel Ponce-de-León and others
Bioinformatics, Volume 36, Issue 6, March 2020, Pages 1986–1988, https://doi.org/10.1093/bioinformatics/btz832
Published: 13 November 2019
Journal Article

AlphaFold at CASP13

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Mohammed AlQuraishi
Bioinformatics, Volume 35, Issue 22, November 2019, Pages 4862–4865, https://doi.org/10.1093/bioinformatics/btz422
Published: 22 May 2019
Journal Article

Functional data analysis for computational biology

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Marzia A Cremona and others
Bioinformatics, Volume 35, Issue 17, September 2019, Pages 3211–3213, https://doi.org/10.1093/bioinformatics/btz045
Published: 22 January 2019
Journal Article

On the biases in predictions of protein stability changes upon variations: the INPS test case

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Ludovica Montanucci and others
Bioinformatics, Volume 35, Issue 14, July 2019, Pages 2525–2527, https://doi.org/10.1093/bioinformatics/bty979
Published: 29 November 2018
Journal Article

Bias in the intervention in prediction measure in random forests: illustrations and recommendations

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Stefano Nembrini
Bioinformatics, Volume 35, Issue 13, July 2019, Pages 2343–2345, https://doi.org/10.1093/bioinformatics/bty959
Published: 21 November 2018
Journal Article

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

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Nidhi Shah and others
Bioinformatics, Volume 35, Issue 9, May 2019, Pages 1613–1614, https://doi.org/10.1093/bioinformatics/bty833
Published: 24 September 2018
Journal Article

Genetic Simulation Resources and the GSR Certification Program

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Bo Peng and others
Bioinformatics, Volume 35, Issue 4, February 2019, Pages 709–710, https://doi.org/10.1093/bioinformatics/bty666
Published: 07 August 2018
Journal Article

Data mining of effect sizes from PubMed abstracts: a cross-study conceptual replication

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Paul Monsarrat and Jean-Noel Vergnes
Bioinformatics, Volume 34, Issue 15, August 2018, Pages 2698–2700, https://doi.org/10.1093/bioinformatics/bty153
Published: 14 March 2018