1-20 of 867
Section: Data and text mining
Save search
Sort by
Journal Article

CancerTrialMatch: a computational resource for the management of biomarker-based clinical trials at a community cancer center

PDF
Padmapriya Swaminathan and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf144, https://doi.org/10.1093/bioinformatics/btaf144
Published: 31 March 2025
Journal Article

Lit-OTAR framework for extracting biological evidences from literature

PDF
Santosh Tirunagari and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf113, https://doi.org/10.1093/bioinformatics/btaf113
Published: 17 March 2025
Journal Article

ipd: an R package for conducting inference on predicted data

PDF
Stephen Salerno and others
Bioinformatics, Volume 41, Issue 2, February 2025, btaf055, https://doi.org/10.1093/bioinformatics/btaf055
Published: 03 February 2025
Journal Article

nipalsMCIA: flexible multi-block dimensionality reduction in R via nonlinear iterative partial least squares

PDF
Max Mattessich and others
Bioinformatics, Volume 41, Issue 1, January 2025, btaf015, https://doi.org/10.1093/bioinformatics/btaf015
Published: 12 January 2025
Journal Article

SampleExplorer: using language models to discover relevant transcriptome data

PDF
Wee Loong Chin and Timo Lassmann
Bioinformatics, Volume 41, Issue 1, January 2025, btae759, https://doi.org/10.1093/bioinformatics/btae759
Published: 30 December 2024
Journal Article

OpenVariant: a toolkit to parse and operate multiple input file formats

PDF
David Martínez-Millán and others
Bioinformatics, Volume 40, Issue 12, December 2024, btae714, https://doi.org/10.1093/bioinformatics/btae714
Published: 02 December 2024
Journal Article

STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication

PDF
Jared M Andrews and others
Bioinformatics, Volume 40, Issue 12, December 2024, btae713, https://doi.org/10.1093/bioinformatics/btae713
Published: 26 November 2024
Journal Article

DeepDR: a deep learning library for drug response prediction

PDF
Zhengxiang Jiang and Pengyong Li
Bioinformatics, Volume 40, Issue 12, December 2024, btae688, https://doi.org/10.1093/bioinformatics/btae688
Published: 18 November 2024
Journal Article

M2ara: unraveling metabolomic drug responses in whole-cell MALDI mass spectrometry bioassays

PDF
Thomas Enzlein and others
Bioinformatics, Volume 40, Issue 11, November 2024, btae694, https://doi.org/10.1093/bioinformatics/btae694
Published: 18 November 2024
Journal Article

LmRaC: a functionally extensible tool for LLM interrogation of user experimental results

PDF
Douglas B Craig and Sorin Drăghici
Bioinformatics, Volume 40, Issue 12, December 2024, btae679, https://doi.org/10.1093/bioinformatics/btae679
Published: 15 November 2024
Journal Article

Facilitating phenotyping from clinical texts: the medkit library

PDF
Antoine Neuraz and others
Bioinformatics, Volume 40, Issue 12, December 2024, btae681, https://doi.org/10.1093/bioinformatics/btae681
Published: 15 November 2024
Journal Article

PubMed Computed Authors in 2024: an open resource of disambiguated author names in biomedical literature Get access

PDF
Shubo Tian and others
Bioinformatics, Volume 40, Issue 11, November 2024, btae672, https://doi.org/10.1093/bioinformatics/btae672
Published: 09 November 2024
Journal Article

PRONA: an R-package for Patient Reported Outcomes Network Analysis Get access

PDF
Brandon H Bergsneider and Orieta Celiku
Bioinformatics, Volume 40, Issue 11, November 2024, btae671, https://doi.org/10.1093/bioinformatics/btae671
Published: 09 November 2024
Journal Article

iSeq: an integrated tool to fetch public sequencing data

PDF
Haoyu Chao and others
Bioinformatics, Volume 40, Issue 11, November 2024, btae641, https://doi.org/10.1093/bioinformatics/btae641
Published: 24 October 2024
Journal Article

SurvBal: compositional microbiome balances for survival outcomes

PDF
Ying Li and others
Bioinformatics, Volume 40, Issue 10, October 2024, btae612, https://doi.org/10.1093/bioinformatics/btae612
Published: 15 October 2024
Journal Article

BenchStab: a tool for automated querying of web-based stability predictors

PDF
Jan Velecký and others
Bioinformatics, Volume 40, Issue 9, September 2024, btae553, https://doi.org/10.1093/bioinformatics/btae553
Published: 11 September 2024
Journal Article

GENEVIC: GENetic data Exploration and Visualization via Intelligent interactive Console

PDF
Anindita Nath and others
Bioinformatics, Volume 40, Issue 10, October 2024, btae500, https://doi.org/10.1093/bioinformatics/btae500
Published: 08 August 2024
Journal Article

GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies

PDF
James V Talwar and others
Bioinformatics, Volume 40, Issue 8, August 2024, btae489, https://doi.org/10.1093/bioinformatics/btae489
Published: 30 July 2024
Journal Article

DDN3.0: determining significant rewiring of biological network structure with differential dependency networks

PDF
Yi Fu and others
Bioinformatics, Volume 40, Issue 6, June 2024, btae376, https://doi.org/10.1093/bioinformatics/btae376
Published: 20 June 2024
Journal Article

Bigtools: a high-performance BigWig and BigBed library in Rust

PDF
Jack D Huey and Nezar Abdennur
Bioinformatics, Volume 40, Issue 6, June 2024, btae350, https://doi.org/10.1093/bioinformatics/btae350
Published: 11 June 2024