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OLS4: A new Ontology Lookup Service for a growing interdisciplinary knowledge ecosystem

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James McLaughlin and others
Bioinformatics, btaf279, https://doi.org/10.1093/bioinformatics/btaf279
Published: 05 May 2025
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Automatic Biomarker Discovery and Enrichment with BRAD

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Joshua Pickard and others
Bioinformatics, btaf159, https://doi.org/10.1093/bioinformatics/btaf159
Published: 05 May 2025
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Effectidor II: A pan-genomic AI-based algorithm for the prediction of type III secretion system effectors

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Naama Wagner and others
Bioinformatics, btaf272, https://doi.org/10.1093/bioinformatics/btaf272
Published: 29 April 2025
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PICRUSt2-SC: an update to the reference database used for functional prediction within PICRUSt2

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Robyn J Wright and Morgan G I Langille
Bioinformatics, btaf269, https://doi.org/10.1093/bioinformatics/btaf269
Published: 28 April 2025
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RabbitSketch: a high-performance sketching library for genome analysis

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Tong Zhang and others
Bioinformatics, Volume 41, Issue 5, May 2025, btaf249, https://doi.org/10.1093/bioinformatics/btaf249
Published: 26 April 2025
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Popcorn: prediction of short coding and noncoding genomic sequences in prokaryotes

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Alison Kyrouz and others
Bioinformatics, Volume 41, Issue 5, May 2025, btaf250, https://doi.org/10.1093/bioinformatics/btaf250
Published: 25 April 2025
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Gencube: centralized retrieval and integration of multi-omics resources from leading databases

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Keun Hong Son and Je-Yoel Cho
Bioinformatics, Volume 41, Issue 4, April 2025, btaf128, https://doi.org/10.1093/bioinformatics/btaf128
Published: 25 April 2025
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TissueViewer: A Web-Based Multiplexed Image Viewer

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David Gerardus Pieter van IJzendoorn and others
Bioinformatics, btaf246, https://doi.org/10.1093/bioinformatics/btaf246
Published: 25 April 2025
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JAX-RNAfold: Scalable Differentiable Folding

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Ryan K Krueger and Max Ward
Bioinformatics, btaf203, https://doi.org/10.1093/bioinformatics/btaf203
Published: 25 April 2025
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argNorm: normalization of antibiotic resistance gene annotations to the Antibiotic Resistance Ontology (ARO)

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Svetlana Ugarcina Perovic and others
Bioinformatics, btaf173, https://doi.org/10.1093/bioinformatics/btaf173
Published: 16 April 2025
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MS1FA: Shiny App for the Annotation of Redundant Features in Untargeted Metabolomics Datasets

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Ruibing Shi and others
Bioinformatics, btaf161, https://doi.org/10.1093/bioinformatics/btaf161
Published: 15 April 2025
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GSLab: open-source platform for advanced phasor analysis in fluorescence microscopy

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Alexander Vallmitjana and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf162, https://doi.org/10.1093/bioinformatics/btaf162
Published: 15 April 2025
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PyEvoCell: an LLM-augmented single-cell trajectory analysis dashboard

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Sachin Mathur and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf158, https://doi.org/10.1093/bioinformatics/btaf158
Published: 10 April 2025
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Sawfish: improving long-read structural variant discovery and genotyping with local haplotype modeling

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Christopher T Saunders and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf136, https://doi.org/10.1093/bioinformatics/btaf136
Published: 09 April 2025
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CoverM: read alignment statistics for metagenomics

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Samuel T N Aroney and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf147, https://doi.org/10.1093/bioinformatics/btaf147
Published: 07 April 2025
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Realfreq: real-time base modification analysis for nanopore sequencing

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Suneth Samarasinghe and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf151, https://doi.org/10.1093/bioinformatics/btaf151
Published: 07 April 2025
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uHAF: a unified hierarchical annotation framework for cell type standardization and harmonization

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Haiyang Bian and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf149, https://doi.org/10.1093/bioinformatics/btaf149
Published: 02 April 2025
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XPRS: a tool for interpretable and explainable polygenic risk score

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Na Yeon Kim and Seunggeun Lee
Bioinformatics, Volume 41, Issue 4, April 2025, btaf143, https://doi.org/10.1093/bioinformatics/btaf143
Published: 31 March 2025
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CancerTrialMatch: a computational resource for the management of biomarker-based clinical trials at a community cancer center

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Padmapriya Swaminathan and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf144, https://doi.org/10.1093/bioinformatics/btaf144
Published: 31 March 2025
Journal Article

wgatools: an ultrafast toolkit for manipulating whole-genome alignments

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Wenjie Wei and others
Bioinformatics, Volume 41, Issue 4, April 2025, btaf132, https://doi.org/10.1093/bioinformatics/btaf132
Published: 27 March 2025