1-20 of 44
Authors: William Stafford Noble
Journal Article
A BLAST from the past: revisiting blastp’s E-value Open Access
Bioinformatics, Volume 40, Issue 12, December 2024, btae729, https://doi.org/10.1093/bioinformatics/btae729
Published: 04 December 2024
Journal Article
A learned score function improves the power of mass spectrometry database search Open Access
Bioinformatics, Volume 40, Issue Supplement_1, July 2024, Pages i410–i417, https://doi.org/10.1093/bioinformatics/btae218
Published: 28 June 2024
Journal Article
LSMMD-MA: scaling multimodal data integration for single-cell genomics data analysis Open Access
Bioinformatics, Volume 39, Issue 7, July 2023, btad420, https://doi.org/10.1093/bioinformatics/btad420
Published: 08 July 2023
Journal Article
MS1Connect: a mass spectrometry run similarity measure Open Access
Bioinformatics, Volume 39, Issue 2, February 2023, btad058, https://doi.org/10.1093/bioinformatics/btad058
Published: 25 January 2023
Journal Article
Group-walk: a rigorous approach to group-wise false discovery rate analysis by target-decoy competition Free
Bioinformatics, Volume 38, Issue Supplement_2, September 2022, Pages ii82–ii88, https://doi.org/10.1093/bioinformatics/btac471
Published: 18 September 2022
Journal Article
Linking cells across single-cell modalities by synergistic matching of neighborhood structure Free
Bioinformatics, Volume 38, Issue Supplement_2, September 2022, Pages ii148–ii154, https://doi.org/10.1093/bioinformatics/btac481
Published: 18 September 2022
Journal Article
DIAmeter: matching peptides to data-independent acquisition mass spectrometry data Open Access
Bioinformatics, Volume 37, Issue Supplement_1, July 2021, Pages i434–i442, https://doi.org/10.1093/bioinformatics/btab284
Published: 12 July 2021
Journal Article
HiCRep.py: fast comparison of Hi-C contact matrices in Python Open Access
Bioinformatics, Volume 37, Issue 18, September 2021, Pages 2996–2997, https://doi.org/10.1093/bioinformatics/btab097
Published: 12 February 2021
Journal Article
Prioritizing transcriptomic and epigenomic experiments using an optimization strategy that leverages imputed data Open Access
Bioinformatics, Volume 37, Issue 4, February 2021, Pages 439–447, https://doi.org/10.1093/bioinformatics/btaa830
Published: 23 September 2020
Journal Article
Response to comments on ‘Empirical comparison of web-based antimicrobial peptide prediction tools’ Free
Bioinformatics, Volume 35, Issue 15, August 2019, Pages 2695–2696, https://doi.org/10.1093/bioinformatics/bty1024
Published: 18 December 2018
Journal Article
Unsupervised embedding of single-cell Hi-C data Open Access
Bioinformatics, Volume 34, Issue 13, July 2018, Pages i96–i104, https://doi.org/10.1093/bioinformatics/bty285
Published: 27 June 2018
Journal Article
GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs Free
Bioinformatics, Volume 34, Issue 16, August 2018, Pages 2701–2707, https://doi.org/10.1093/bioinformatics/bty164
Published: 15 March 2018
Journal Article
Segway 2.0: Gaussian mixture models and minibatch training Open Access
Bioinformatics, Volume 34, Issue 4, February 2018, Pages 669–671, https://doi.org/10.1093/bioinformatics/btx603
Published: 22 September 2017
Journal Article
DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding Open Access
Bioinformatics, Volume 33, Issue 19, October 2017, Pages 3003–3010, https://doi.org/10.1093/bioinformatics/btx336
Published: 24 May 2017
Journal Article
Empirical comparison of web-based antimicrobial peptide prediction tools Free
Bioinformatics, Volume 33, Issue 13, July 2017, Pages 1921–1929, https://doi.org/10.1093/bioinformatics/btx081
Published: 15 February 2017
Journal Article
MCAST: scanning for cis-regulatory motif clusters Free
Bioinformatics, Volume 32, Issue 8, April 2016, Pages 1217–1219, https://doi.org/10.1093/bioinformatics/btv750
Published: 24 December 2015
Journal Article
A statistical approach for inferring the 3D structure of the genome Open Access
Bioinformatics, Volume 30, Issue 12, June 2014, Pages i26–i33, https://doi.org/10.1093/bioinformatics/btu268
Published: 11 June 2014
Journal Article
Epigenetic priors for identifying active transcription factor binding sites Free
Bioinformatics, Volume 28, Issue 1, January 2012, Pages 56–62, https://doi.org/10.1093/bioinformatics/btr614
Published: 08 November 2011
Journal Article
Improved similarity scores for comparing motifs Free
Bioinformatics, Volume 27, Issue 12, June 2011, Pages 1603–1609, https://doi.org/10.1093/bioinformatics/btr257
Published: 04 May 2011
Journal Article
FIMO: scanning for occurrences of a given motif Open Access
Bioinformatics, Volume 27, Issue 7, April 2011, Pages 1017–1018, https://doi.org/10.1093/bioinformatics/btr064
Published: 16 February 2011
