1-17 of 17
Authors: Jing Zhang
Journal Article
DPAM-AI: a domain parser for AlphaFold models powered by artificial intelligence
Bioinformatics, Volume 41, Issue 1, January 2025, btae740, https://doi.org/10.1093/bioinformatics/btae740
Published: 13 December 2024
Journal Article
FMCA-DTI: a fragment-oriented method based on a multihead cross attention mechanism to improve drug–target interaction prediction
Bioinformatics, Volume 40, Issue 6, June 2024, btae347, https://doi.org/10.1093/bioinformatics/btae347
Published: 29 May 2024
Journal Article
Impeller: a path-based heterogeneous graph learning method for spatial transcriptomic data imputation
Bioinformatics, Volume 40, Issue 6, June 2024, btae339, https://doi.org/10.1093/bioinformatics/btae339
Published: 28 May 2024
Journal Article
Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling
Bioinformatics, Volume 38, Issue 18, September 2022, Pages 4301–4311, https://doi.org/10.1093/bioinformatics/btac527
Published: 26 July 2022
Journal Article
SAILER: scalable and accurate invariant representation learning for single-cell ATAC-seq processing and integration
Bioinformatics, Volume 37, Issue Supplement_1, July 2021, Pages i317–i326, https://doi.org/10.1093/bioinformatics/btab303
Published: 12 July 2021
Journal Article
DECODE: a Deep-learning framework for Condensing enhancers and refining boundaries with large-scale functional assays
Bioinformatics, Volume 37, Issue Supplement_1, July 2021, Pages i280–i288, https://doi.org/10.1093/bioinformatics/btab283
Published: 12 July 2021
Journal Article
Active learning to classify macromolecular structures in situ for less supervision in cryo-electron tomography
Bioinformatics, Volume 37, Issue 16, August 2021, Pages 2340–2346, https://doi.org/10.1093/bioinformatics/btab123
Published: 23 February 2021
Journal Article
SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments
Bioinformatics, Volume 37, Issue 12, June 2021, Pages 1756–1758, https://doi.org/10.1093/bioinformatics/btaa1039
Published: 20 January 2021
Journal Article
TopicNet: a framework for measuring transcriptional regulatory network change
Bioinformatics, Volume 36, Issue Supplement_1, July 2020, Pages i474–i481, https://doi.org/10.1093/bioinformatics/btaa403
Published: 13 July 2020
Journal Article
MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool
Bioinformatics, Volume 34, Issue 6, March 2018, Pages 1031–1033, https://doi.org/10.1093/bioinformatics/btx700
Published: 24 November 2017
Journal Article
WemIQ: an accurate and robust isoform quantification method for RNA-seq data
Bioinformatics, Volume 31, Issue 6, March 2015, Pages 878–885, https://doi.org/10.1093/bioinformatics/btu757
Published: 28 November 2014
Journal Article
Detecting and understanding genetic and structural features in HIV-1 B subtype V3 underlying HIV-1 co-receptor usage
Bioinformatics, Volume 29, Issue 4, February 2013, Pages 451–460, https://doi.org/10.1093/bioinformatics/btt002
Published: 06 January 2013
Journal Article
PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data
Bioinformatics, Volume 29, Issue 1, January 2013, Pages 124–125, https://doi.org/10.1093/bioinformatics/bts627
Published: 25 October 2012
Journal Article
dbNEI2.0: building multilayer network for drug–NEI–disease
Bioinformatics, Volume 24, Issue 20, October 2008, Pages 2409–2411, https://doi.org/10.1093/bioinformatics/btn388
Published: 25 July 2008
Journal Article
Computing exact P-values for DNA motifs
Bioinformatics, Volume 23, Issue 5, March 2007, Pages 531–537, https://doi.org/10.1093/bioinformatics/btl662
Published: 18 January 2007
Journal Article
ATID: a web-oriented database for collection of publicly available alternative translational initiation events
Bioinformatics, Volume 21, Issue 23, December 2005, Pages 4312–4314, https://doi.org/10.1093/bioinformatics/bti704
Published: 10 October 2005
Journal Article
MicroRNA identification based on sequence and structure alignment
Bioinformatics, Volume 21, Issue 18, September 2005, Pages 3610–3614, https://doi.org/10.1093/bioinformatics/bti562
Published: 30 June 2005
