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APPLICATIONS NOTES (2)
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Authors: Jason Liu

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Journal Article

DECODE: a Deep-learning framework for Condensing enhancers and refining boundaries with large-scale functional assays

PDF

Zhanlin Chen and others

Bioinformatics, Volume 37, Issue Supplement_1, July 2021, Pages i280–i288, https://doi.org/10.1093/bioinformatics/btab283

Published: 12 July 2021

Supplementary data

Journal Article

Gene Tracer: a smart, interactive, voice-controlled Alexa skill For gene information retrieval and browsing, mutation annotation and network visualization

PDF

Shaoke Lou and others

Bioinformatics, Volume 37, Issue 18, September 2021, Pages 2998–3000, https://doi.org/10.1093/bioinformatics/btab107

Published: 01 April 2021

Supplementary data

Journal Article

SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments

PDF

Zhanlin Chen and others

Bioinformatics, Volume 37, Issue 12, June 2021, Pages 1756–1758, https://doi.org/10.1093/bioinformatics/btaa1039

Published: 20 January 2021

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Journal Article

TopicNet: a framework for measuring transcriptional regulatory network change

PDF

Shaoke Lou and others

Bioinformatics, Volume 36, Issue Supplement_1, July 2020, Pages i474–i481, https://doi.org/10.1093/bioinformatics/btaa403

Published: 13 July 2020

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