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Authors: Fabrizio Costa
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Journal Article

Heterogeneous networks integration for disease–gene prioritization with node kernels

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Van Dinh Tran and others
Bioinformatics, Volume 36, Issue 9, May 2020, Pages 2649–2656, https://doi.org/10.1093/bioinformatics/btaa008
Published: 28 January 2020
Journal Article

ShaKer: RNA SHAPE prediction using graph kernel

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Stefan Mautner and others
Bioinformatics, Volume 35, Issue 14, July 2019, Pages i354–i359, https://doi.org/10.1093/bioinformatics/btz395
Published: 05 July 2019
Journal Article

An efficient graph kernel method for non-coding RNA functional prediction

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Nicolò Navarin and Fabrizio Costa
Bioinformatics, Volume 33, Issue 17, September 2017, Pages 2642–2650, https://doi.org/10.1093/bioinformatics/btx295
Published: 05 May 2017
Journal Article

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs

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Milad Miladi and others
Bioinformatics, Volume 33, Issue 14, July 2017, Pages 2089–2096, https://doi.org/10.1093/bioinformatics/btx114
Published: 27 February 2017
Journal Article

Characterizing leader sequences of CRISPR loci

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Omer S Alkhnbashi and others
Bioinformatics, Volume 32, Issue 17, September 2016, Pages i576–i585, https://doi.org/10.1093/bioinformatics/btw454
Published: 29 August 2016
Journal Article

RNAcommender: genome-wide recommendation of RNA–protein interactions

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Gianluca Corrado and others
Bioinformatics, Volume 32, Issue 23, December 2016, Pages 3627–3634, https://doi.org/10.1093/bioinformatics/btw517
Published: 08 August 2016
Journal Article

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species

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Mario Di Guardo and others
Bioinformatics, Volume 31, Issue 23, December 2015, Pages 3873–3874, https://doi.org/10.1093/bioinformatics/btv446
Published: 06 August 2015
Journal Article

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

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Omer S. Alkhnbashi and others
Bioinformatics, Volume 30, Issue 17, September 2014, Pages i489–i496, https://doi.org/10.1093/bioinformatics/btu459
Published: 22 August 2014
Journal Article

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles

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Pavankumar Videm and others
Bioinformatics, Volume 30, Issue 12, June 2014, Pages i274–i282, https://doi.org/10.1093/bioinformatics/btu270
Published: 11 June 2014
Journal Article

MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions

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Kousik Kundu and others
Bioinformatics, Volume 30, Issue 18, September 2014, Pages 2668–2669, https://doi.org/10.1093/bioinformatics/btu350
Published: 28 May 2014
Journal Article

A graph kernel approach for alignment-free domain–peptide interaction prediction with an application to human SH3 domains

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Kousik Kundu and others
Bioinformatics, Volume 29, Issue 13, July 2013, Pages i335–i343, https://doi.org/10.1093/bioinformatics/btt220
Published: 19 June 2013
Journal Article

GraphClust: alignment-free structural clustering of local RNA secondary structures

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Steffen Heyne and others
Bioinformatics, Volume 28, Issue 12, June 2012, Pages i224–i232, https://doi.org/10.1093/bioinformatics/bts224
Published: 09 June 2012
Journal Article

Classification of small molecules by two- and three-dimensional decomposition kernels

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Alessio Ceroni and others
Bioinformatics, Volume 23, Issue 16, August 2007, Pages 2038–2045, https://doi.org/10.1093/bioinformatics/btm298
Published: 05 June 2007