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Authors: Ying Li
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Journal Article
Multi-Manifolds fusing hyperbolic graph network balanced by pareto optimization for identifying spatial domains of spatial transcriptomics
Ying Li and others
Briefings in Bioinformatics, Volume 26, Issue 2, March 2025, bbaf162, https://doi.org/10.1093/bib/bbaf162
Published: 12 April 2025
Journal Article
A microbial knowledge graph-based deep learning model for predicting candidate microbes for target hosts
Jie Pan and others
Briefings in Bioinformatics, Volume 25, Issue 3, May 2024, bbae119, https://doi.org/10.1093/bib/bbae119
Published: 28 March 2024
Journal Article
Diagnostic Prediction of portal vein thrombosis in chronic cirrhosis patients using data-driven precision medicine model
Ying Li and others
Briefings in Bioinformatics, Volume 25, Issue 1, January 2024, bbad478, https://doi.org/10.1093/bib/bbad478
Published: 13 January 2024
Journal Article
VIPpred: a novel model for predicting variant impact on phosphorylation events driving carcinogenesis
Xiaofeng Xu and others
Briefings in Bioinformatics, Volume 25, Issue 1, January 2024, bbad480, https://doi.org/10.1093/bib/bbad480
Published: 29 December 2023
Journal Article
LION: an integrated R package for effective prediction of ncRNA–protein interaction
Siyu Han and others
Briefings in Bioinformatics, Volume 23, Issue 6, November 2022, bbac420, https://doi.org/10.1093/bib/bbac420
Published: 24 September 2022
Journal Article
TIGER: technical variation elimination for metabolomics data using ensemble learning architecture
Siyu Han and others
Briefings in Bioinformatics, Volume 23, Issue 2, March 2022, bbab535, https://doi.org/10.1093/bib/bbab535
Published: 03 January 2022
Journal Article
siGCD: a web server to explore survival interaction of genes, cells and drugs in human cancers
XiuLiang Cui and others
Briefings in Bioinformatics, Volume 22, Issue 5, September 2021, bbab058, https://doi.org/10.1093/bib/bbab058
Published: 05 April 2021
Journal Article
Deep forest ensemble learning for classification of alignments of non-coding RNA sequences based on multi-view structure representations
Ying Li and others
Briefings in Bioinformatics, Volume 22, Issue 4, July 2021, bbaa354, https://doi.org/10.1093/bib/bbaa354
Published: 23 December 2020
Journal Article
Reference genome and annotation updates lead to contradictory prognostic predictions in gene expression signatures: a case study of resected stage I lung adenocarcinoma
Zheyang Zhang and others
Briefings in Bioinformatics, Volume 22, Issue 3, May 2021, bbaa081, https://doi.org/10.1093/bib/bbaa081
Published: 08 May 2020
Journal Article
MCAM abnormal expression and clinical outcome associations are highly cancer dependent as revealed through pan-cancer analysis
Yunxia An and others
Briefings in Bioinformatics, Volume 21, Issue 2, March 2020, Pages 709–718, https://doi.org/10.1093/bib/bbz019
Published: 28 February 2019
Journal Article
LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property
Siyu Han and others
Briefings in Bioinformatics, Volume 20, Issue 6, November 2019, Pages 2009–2027, https://doi.org/10.1093/bib/bby065
Published: 31 July 2018
Journal Article
Comparison of the general co-expression landscapes between human and mouse
Di Liu and others
Briefings in Bioinformatics, Volume 19, Issue 5, September 2018, Pages 811–820, https://doi.org/10.1093/bib/bbx024
Published: 14 March 2017
Journal Article
The framework for population epigenetic study
Linna Zhao and others
Briefings in Bioinformatics, Volume 19, Issue 1, January 2018, Pages 89–100, https://doi.org/10.1093/bib/bbw098
Published: 19 October 2016
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