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Volume 12, Issue 5, September 2011
Special Issue: Orthology and Applications
Editorial
Editorial: Orthology and applications
Christophe Dessimoz
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 375–376, https://doi.org/10.1093/bib/bbr057
Obituary
Obituary: Walter Fitch and the orthology paradigm
Eugene V. Koonin
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 377–378, https://doi.org/10.1093/bib/bbr058
Special Issue Papers
Computational methods for Gene Orthology inference
David M. Kristensen and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 379–391, https://doi.org/10.1093/bib/bbr030
Models, algorithms and programs for phylogeny reconciliation
Jean-Philippe Doyon and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 392–400, https://doi.org/10.1093/bib/bbr045
Positional orthology: putting genomic evolutionary relationships into context
Colin N. Dewey
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 401–412, https://doi.org/10.1093/bib/bbr040
Ortholog identification in the presence of domain architecture rearrangement
Kimmen Sjölander and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 413–422, https://doi.org/10.1093/bib/bbr036
Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees
Brigitte Boeckmann and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 423–435, https://doi.org/10.1093/bib/bbr034
When orthologs diverge between human and mouse
Walid H. Gharib and Marc Robinson-Rechavi
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 436–441, https://doi.org/10.1093/bib/bbr031
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication
Jaime Huerta-Cepas and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 442–448, https://doi.org/10.1093/bib/bbr022
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 449–462, https://doi.org/10.1093/bib/bbr042
OrthoDisease: tracking disease gene orthologs across 100 species
Kristoffer Forslund and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 463–473, https://doi.org/10.1093/bib/bbr024
Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes)
Christophe Dessimoz and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 474–484, https://doi.org/10.1093/bib/bbr038
Letter to the Editor
Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information
Thomas Schmitt and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 485–488, https://doi.org/10.1093/bib/bbr025
Non Special Issue Papers
Base-calling for next-generation sequencing platforms
Christian Ledergerber and Christophe Dessimoz
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 489–497, https://doi.org/10.1093/bib/bbq077
Missing value imputation for gene expression data: computational techniques to recover missing data from available information
Alan Wee-Chung Liew and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 498–513, https://doi.org/10.1093/bib/bbq080
Monovalent and divalent salt correction algorithms for Tm prediction—recommendations for Primer3 usage
Nicolas von Ahsen and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 514–517, https://doi.org/10.1093/bib/bbq081
Literature-aided interpretation of gene expression data with the weighted global test
Rob Jelier and others
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 518–529, https://doi.org/10.1093/bib/bbq082
Evolution and applications of plant pathway resources and databases
Yves Sucaet and Taru Deva
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 530–544, https://doi.org/10.1093/bib/bbq083
Letter to the Editor
Letter to the Editor: Current progress in patient-specific modeling by Neal and Kerckhoffs (2010)
Adam Wittek and Karol Miller
Briefings in Bioinformatics, Volume 12, Issue 5, September 2011, Pages 545–546, https://doi.org/10.1093/bib/bbr046
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